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Protein
Submitted name:

ARID4A protein

Gene

ARID4A

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
ARID4A proteinImported
Gene namesi
Name:ARID4AImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA34249.

PTM / Processingi

Proteomic databases

PaxDbiQ05CG0.

Expressioni

Gene expression databases

GenevisibleiQ05CG0. HS.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000347602.

Structurei

3D structure databases

ProteinModelPortaliQ05CG0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini309 – 40193ARIDInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains ARID domain.SAAS annotation

Phylogenomic databases

eggNOGiKOG2744. Eukaryota.
KOG3001. Eukaryota.
ENOG410Y2AP. LUCA.
HOGENOMiHOG000201203.
HOVERGENiHBG058248.
KOiK19194.

Family and domain databases

Gene3Di1.10.150.60. 1 hit.
InterProiIPR001606. ARID_dom.
IPR012603. RBB1NT.
IPR002999. Tudor.
[Graphical view]
PfamiPF01388. ARID. 1 hit.
PF08169. RBB1NT. 1 hit.
[Graphical view]
SMARTiSM00501. BRIGHT. 1 hit.
SM00333. TUDOR. 1 hit.
[Graphical view]
SUPFAMiSSF46774. SSF46774. 1 hit.
PROSITEiPS51011. ARID. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q05CG0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKAADEPAYL TVGTDVSAKY RGAFCEAKIK TVKRLVKVKV LLKQDNTTQL
60 70 80 90 100
VQDDQVKGPL RVGAIVETRT SDGSFQEAII SKLTDASWYT VVFDDGDERT
110 120 130 140 150
LRRTSLCLKG ERHFAESETL DQLPLTNPEH FGTPVIAKKT NRGRRSSLPV
160 170 180 190 200
TEDEKEEESS EEEDEDKRRL NDELLGKVVS VVSATERTEW YPALVISPSC
210 220 230 240 250
NDDITVKKDQ CLVRSFIDSK FYSIARKDIK EVDILNLPES ELSTKPGLQK
260 270 280 290 300
ASIFLKTRVV PDNWKMDISE ILESSSSDDE DGPAEENDEE KEKEAKKTEE
310 320 330 340 350
EVPEEELDPE ERDNFLQQLY KFMEDRGTPI NKPPVLGYKD LNLFKLFRLV
360 370 380 390 400
YHQGGCDNID SGAVWKQIYM DLGIPILNSA ASYNVKTAYR KYLYGFEEYC
410 420
RSANIQFRTV HHHEPKKKKK KKKK
Length:424
Mass (Da):48,479
Last modified:November 14, 2006 - v1
Checksum:iFEDB5BFE9E0DA1C5
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei424 – 4241Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC026230 mRNA. Translation: AAH26230.1.
RefSeqiNP_002883.3. NM_002892.3.
NP_075376.2. NM_023000.2.
NP_075377.2. NM_023001.2.
UniGeneiHs.161000.

Genome annotation databases

GeneIDi5926.
KEGGihsa:5926.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC026230 mRNA. Translation: AAH26230.1.
RefSeqiNP_002883.3. NM_002892.3.
NP_075376.2. NM_023000.2.
NP_075377.2. NM_023001.2.
UniGeneiHs.161000.

3D structure databases

ProteinModelPortaliQ05CG0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000347602.

Proteomic databases

PaxDbiQ05CG0.

Protocols and materials databases

DNASUi5926.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi5926.
KEGGihsa:5926.

Organism-specific databases

CTDi5926.
PharmGKBiPA34249.

Phylogenomic databases

eggNOGiKOG2744. Eukaryota.
KOG3001. Eukaryota.
ENOG410Y2AP. LUCA.
HOGENOMiHOG000201203.
HOVERGENiHBG058248.
KOiK19194.

Miscellaneous databases

ChiTaRSiARID4A. human.
GenomeRNAii5926.

Gene expression databases

GenevisibleiQ05CG0. HS.

Family and domain databases

Gene3Di1.10.150.60. 1 hit.
InterProiIPR001606. ARID_dom.
IPR012603. RBB1NT.
IPR002999. Tudor.
[Graphical view]
PfamiPF01388. ARID. 1 hit.
PF08169. RBB1NT. 1 hit.
[Graphical view]
SMARTiSM00501. BRIGHT. 1 hit.
SM00333. TUDOR. 1 hit.
[Graphical view]
SUPFAMiSSF46774. SSF46774. 1 hit.
PROSITEiPS51011. ARID. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: LungImported.

Entry informationi

Entry nameiQ05CG0_HUMAN
AccessioniPrimary (citable) accession number: Q05CG0
Entry historyi
Integrated into UniProtKB/TrEMBL: November 14, 2006
Last sequence update: November 14, 2006
Last modified: June 8, 2016
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.