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Protein
Submitted name:

PRPF40A protein

Gene

PRPF40A

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

Enzyme and pathway databases

SignaLinkiQ05C41.

Names & Taxonomyi

Protein namesi
Submitted name:
PRPF40A proteinImported
Gene namesi
Name:PRPF40AImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA28195.

PTM / Processingi

Proteomic databases

PaxDbiQ05C41.
PeptideAtlasiQ05C41.
PRIDEiQ05C41.

Expressioni

Gene expression databases

GenevisibleiQ05C41. HS.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000386458.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini98 – 13134WWInterPro annotationAdd
BLAST
Domaini144 – 17229WWInterPro annotationAdd
BLAST
Domaini351 – 40555FFInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG0152. Eukaryota.
COG5104. LUCA.
HOGENOMiHOG000231802.
KOiK12821.

Family and domain databases

Gene3Di1.10.10.440. 1 hit.
InterProiIPR002713. FF_domain.
IPR001202. WW_dom.
[Graphical view]
PfamiPF01846. FF. 1 hit.
PF00397. WW. 2 hits.
[Graphical view]
SMARTiSM00441. FF. 1 hit.
SM00456. WW. 2 hits.
[Graphical view]
SUPFAMiSSF51045. SSF51045. 2 hits.
SSF81698. SSF81698. 1 hit.
PROSITEiPS51676. FF. 1 hit.
PS01159. WW_DOMAIN_1. 2 hits.
PS50020. WW_DOMAIN_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q05C41-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRPGTGAERG GLMMGHPGMH YAPMGMHPMG QRANMPPVPH GMMPQMMPPM
60 70 80 90 100
GGPPMGQMPG MMSSVMPGMM MSHMSQASMQ PALPPGVNSM DVAAGTASGA
110 120 130 140 150
KSMWTEHKSP DGRTYYYNTE TKQSTWEKPD DLKTPAEQLL SKCPWKEYKS
160 170 180 190 200
DSGKPYYYNS QTKESRWAKP KELEDLEGYQ NTIVAGSLIT KSNLHAMIKA
210 220 230 240 250
EESSKQEECT TTSTAPVPTT EIPTTMSTMA AAEAAAAVVA AAAAAAAAAA
260 270 280 290 300
AANANASTSA SNTVSGTVPV VPEPEVTSIV ATVVDNENTV TISTEEQAQL
310 320 330 340 350
TSTPAIQDQS VEVSSNTGEE TSKQETVADF TPKKEEEESQ PAKKTYTWNT
360 370 380 390 400
KEEAKQAFKE LLKEKRVPSN ASWEQAMKMI INDPRYSALA KLSEKKQAFN
410
AYKVQKKKKK KKKK
Length:414
Mass (Da):44,773
Last modified:November 14, 2006 - v1
Checksum:i3945EEBFE1C292F4
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei414 – 4141Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC029414 mRNA. Translation: AAH29414.1.
RefSeqiNP_060362.3. NM_017892.3.
UniGeneiHs.643580.

Genome annotation databases

GeneIDi55660.
KEGGihsa:55660.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC029414 mRNA. Translation: AAH29414.1.
RefSeqiNP_060362.3. NM_017892.3.
UniGeneiHs.643580.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000386458.

Proteomic databases

PaxDbiQ05C41.
PeptideAtlasiQ05C41.
PRIDEiQ05C41.

Protocols and materials databases

DNASUi55660.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi55660.
KEGGihsa:55660.

Organism-specific databases

CTDi55660.
PharmGKBiPA28195.

Phylogenomic databases

eggNOGiKOG0152. Eukaryota.
COG5104. LUCA.
HOGENOMiHOG000231802.
KOiK12821.

Enzyme and pathway databases

SignaLinkiQ05C41.

Miscellaneous databases

ChiTaRSiPRPF40A. human.
GenomeRNAii55660.

Gene expression databases

GenevisibleiQ05C41. HS.

Family and domain databases

Gene3Di1.10.10.440. 1 hit.
InterProiIPR002713. FF_domain.
IPR001202. WW_dom.
[Graphical view]
PfamiPF01846. FF. 1 hit.
PF00397. WW. 2 hits.
[Graphical view]
SMARTiSM00441. FF. 1 hit.
SM00456. WW. 2 hits.
[Graphical view]
SUPFAMiSSF51045. SSF51045. 2 hits.
SSF81698. SSF81698. 1 hit.
PROSITEiPS51676. FF. 1 hit.
PS01159. WW_DOMAIN_1. 2 hits.
PS50020. WW_DOMAIN_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ05C41_HUMAN
AccessioniPrimary (citable) accession number: Q05C41
Entry historyi
Integrated into UniProtKB/TrEMBL: November 14, 2006
Last sequence update: November 14, 2006
Last modified: July 6, 2016
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.