Q058E8 (Q058E8_BUCCC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000715

Gene names

Name:	rpoH EMBL ABJ90501.1
Ordered Locus Names:	BCc_016

Organism

Buchnera aphidicola subsp. Cinara cedri (strain Cc) [Complete proteome] [HAMAP]

Taxonomic identifier

372461 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Buchnera

Protein attributes

Sequence length	291 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715
Sequence similarities	Belongs to the sigma-70 factor family. RuleBase RU000715

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding SAAS SAAS013325 RuleBase RU000715
Molecular function	Nucleotidyltransferase EMBL ABJ90501.1 Sigma factor RuleBase RU000715 SAAS SAAS013325 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	response to heat Inferred from electronic annotation. Source: InterPro transcription initiation, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW nucleotidyltransferase activity Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q058E8 [UniParc]. Last modified November 14, 2006. Version 1. Checksum: ADBF57B5C963B395	FASTA	291	33,753
	10 20 30 40 50 60 MKKLESQINM IGFFNIGSLE AYIRLANSFS ILTSEKEKSL AKKLFFYSDI ESAKLLILSN 70 80 90 100 110 120 LRFVIHVAKN YSGYGLPQAD LIQEGNIGLM KAIRRFNPNI NVRLVSFAVH WIKSEIHEYV 130 140 150 160 170 180 LRNWRIVKIA TTKAQRKLFF NLRKSKKRLG WFNRHEIDTV SQELGVSTQE VKEMEARMSA 190 200 210 220 230 240 QDITFDLSAK DSHLDSITNN LRTSFHLEDK KSNFSIKIEK DNWALHATNK LTNALLILDK 250 260 270 280 290 RSQQIIKRRW LDDDKPKITL QAIARDYGIS AERVRQLEKN AMKKLKIAIE A

References

[1]

"A small microbial genome: the end of a long symbiotic relationship?" Perez-Brocal V., Gil R., Ramos S., Lamelas A., Postigo M., Michelena J.M., Silva F.J., Moya A., Latorre A. Science 314:312-313(2006) [PubMed: 17038625] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Cc.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000263 Genomic DNA. Translation: ABJ90501.1.
RefSeq	YP_802594.1. NC_008513.1.
3D structure databases
ProteinModelPortal	Q058E8.
ModBase	Search...
Protein-protein interaction databases
STRING	Q058E8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EBBUCT00000001251; EBBUCP00000001161; EBBUCG00000001251.
GeneID	4440656.
GenomeReviews	Gene locus BCc_016 in contig CP000263_GR.
KEGG	bcc:BCc_016.
PATRIC	21245967. VBIBucAph7855_0015.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0568.
GeneTree	EBGT00050000007966.
HOGENOM	HBG745096.
OMA	AYINTVH.
Family and domain databases
InterPro	IPR014284. RNA_pol_sigma-70. IPR000943. RNA_pol_sigma70. IPR007627. RNA_pol_sigma70_r2. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR012759. RNA_pol_sigma_RpoH_proteobac. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 1 hit.
KO	K03089.
Pfam	PF04542. Sigma70_r2. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 1 hit.
TIGRFAMs	TIGR02392. RpoH_proteo. 1 hit. TIGR02937. Sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q058E8_BUCCC

Accession

Primary (citable) accession number: Q058E8

Entry history

Integrated into UniProtKB/TrEMBL:	November 14, 2006
Last sequence update:	November 14, 2006
Last modified:	December 14, 2011
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)