ID SYRC_YEAST Reviewed; 607 AA. AC Q05506; D6VSX2; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1996, sequence version 1. DT 27-MAR-2024, entry version 200. DE RecName: Full=Arginine--tRNA ligase, cytoplasmic; DE EC=6.1.1.19; DE AltName: Full=Arginyl-tRNA synthetase; DE Short=ArgRS; GN OrderedLocusNames=YDR341C; ORFNames=D9651.10; OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; OC Saccharomycetales; Saccharomycetaceae; Saccharomyces. OX NCBI_TaxID=559292; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 204508 / S288c; RX PubMed=9169867; RA Jacq C., Alt-Moerbe J., Andre B., Arnold W., Bahr A., Ballesta J.P.G., RA Bargues M., Baron L., Becker A., Biteau N., Bloecker H., Blugeon C., RA Boskovic J., Brandt P., Brueckner M., Buitrago M.J., Coster F., RA Delaveau T., del Rey F., Dujon B., Eide L.G., Garcia-Cantalejo J.M., RA Goffeau A., Gomez-Peris A., Granotier C., Hanemann V., Hankeln T., RA Hoheisel J.D., Jaeger W., Jimenez A., Jonniaux J.-L., Kraemer C., RA Kuester H., Laamanen P., Legros Y., Louis E.J., Moeller-Rieker S., RA Monnet A., Moro M., Mueller-Auer S., Nussbaumer B., Paricio N., Paulin L., RA Perea J., Perez-Alonso M., Perez-Ortin J.E., Pohl T.M., Prydz H., RA Purnelle B., Rasmussen S.W., Remacha M.A., Revuelta J.L., Rieger M., RA Salom D., Saluz H.P., Saiz J.E., Saren A.-M., Schaefer M., Scharfe M., RA Schmidt E.R., Schneider C., Scholler P., Schwarz S., Soler-Mira A., RA Urrestarazu L.A., Verhasselt P., Vissers S., Voet M., Volckaert G., RA Wagner G., Wambutt R., Wedler E., Wedler H., Woelfl S., Harris D.E., RA Bowman S., Brown D., Churcher C.M., Connor R., Dedman K., Gentles S., RA Hamlin N., Hunt S., Jones L., McDonald S., Murphy L.D., Niblett D., RA Odell C., Oliver K., Rajandream M.A., Richards C., Shore L., Walsh S.V., RA Barrell B.G., Dietrich F.S., Mulligan J.T., Allen E., Araujo R., Aviles E., RA Berno A., Carpenter J., Chen E., Cherry J.M., Chung E., Duncan M., RA Hunicke-Smith S., Hyman R.W., Komp C., Lashkari D., Lew H., Lin D., RA Mosedale D., Nakahara K., Namath A., Oefner P., Oh C., Petel F.X., RA Roberts D., Schramm S., Schroeder M., Shogren T., Shroff N., Winant A., RA Yelton M.A., Botstein D., Davis R.W., Johnston M., Andrews S., Brinkman R., RA Cooper J., Ding H., Du Z., Favello A., Fulton L., Gattung S., Greco T., RA Hallsworth K., Hawkins J., Hillier L.W., Jier M., Johnson D., Johnston L., RA Kirsten J., Kucaba T., Langston Y., Latreille P., Le T., Mardis E., RA Menezes S., Miller N., Nhan M., Pauley A., Peluso D., Rifkin L., Riles L., RA Taich A., Trevaskis E., Vignati D., Wilcox L., Wohldman P., Vaudin M., RA Wilson R., Waterston R., Albermann K., Hani J., Heumann K., Kleine K., RA Mewes H.-W., Zollner A., Zaccaria P.; RT "The nucleotide sequence of Saccharomyces cerevisiae chromosome IV."; RL Nature 387:75-78(1997). RN [2] RP GENOME REANNOTATION. RC STRAIN=ATCC 204508 / S288c; RX PubMed=24374639; DOI=10.1534/g3.113.008995; RA Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R., RA Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S., RA Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M., Cherry J.M.; RT "The reference genome sequence of Saccharomyces cerevisiae: Then and now."; RL G3 (Bethesda) 4:389-398(2014). RN [3] RP LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS]. RX PubMed=14562106; DOI=10.1038/nature02046; RA Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., RA O'Shea E.K., Weissman J.S.; RT "Global analysis of protein expression in yeast."; RL Nature 425:737-741(2003). RN [4] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-15, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC STRAIN=ADR376; RX PubMed=17330950; DOI=10.1021/pr060559j; RA Li X., Gerber S.A., Rudner A.D., Beausoleil S.A., Haas W., Villen J., RA Elias J.E., Gygi S.P.; RT "Large-scale phosphorylation analysis of alpha-factor-arrested RT Saccharomyces cerevisiae."; RL J. Proteome Res. 6:1190-1197(2007). RN [5] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-15, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=18407956; DOI=10.1074/mcp.m700468-mcp200; RA Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.; RT "A multidimensional chromatography technology for in-depth phosphoproteome RT analysis."; RL Mol. Cell. Proteomics 7:1389-1396(2008). RN [6] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-15, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=19779198; DOI=10.1126/science.1172867; RA Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.; RT "Global analysis of Cdk1 substrate phosphorylation sites provides insights RT into evolution."; RL Science 325:1682-1686(2009). RN [7] RP ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2, CLEAVAGE OF INITIATOR RP METHIONINE [LARGE SCALE ANALYSIS], AND IDENTIFICATION BY MASS SPECTROMETRY RP [LARGE SCALE ANALYSIS]. RX PubMed=22814378; DOI=10.1073/pnas.1210303109; RA Van Damme P., Lasa M., Polevoda B., Gazquez C., Elosegui-Artola A., RA Kim D.S., De Juan-Pardo E., Demeyer K., Hole K., Larrea E., Timmerman E., RA Prieto J., Arnesen T., Sherman F., Gevaert K., Aldabe R.; RT "N-terminal acetylome analyses and functional insights of the N-terminal RT acetyltransferase NatB."; RL Proc. Natl. Acad. Sci. U.S.A. 109:12449-12454(2012). RN [8] {ECO:0007744|PDB:1BS2} RP X-RAY CRYSTALLOGRAPHY (2.75 ANGSTROMS) IN COMPLEX WITH L-ARGININE, AND RP SUBUNIT. RX PubMed=9736621; DOI=10.1093/emboj/17.18.5438; RA Cavarelli J., Delagoutte B., Eriani G., Gangloff J., Moras D.; RT "L-arginine recognition by yeast arginyl-tRNA synthetase."; RL EMBO J. 17:5438-5448(1998). RN [9] {ECO:0007744|PDB:1F7U, ECO:0007744|PDB:1F7V} RP X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS) IN COMPLEX WITH L-ARGININE AND RNA. RX PubMed=11060012; DOI=10.1093/emboj/19.21.5599; RA Delagoutte B., Moras D., Cavarelli J.; RT "tRNA aminoacylation by arginyl-tRNA synthetase: induced conformations RT during substrates binding."; RL EMBO J. 19:5599-5610(2000). CC -!- FUNCTION: Forms part of a macromolecular complex that catalyzes the CC attachment of specific amino acids to cognate tRNAs during protein CC synthesis. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: CC Reaction=ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl- CC tRNA(Arg); Xref=Rhea:RHEA:20301, Rhea:RHEA-COMP:9658, Rhea:RHEA- CC COMP:9673, ChEBI:CHEBI:30616, ChEBI:CHEBI:32682, ChEBI:CHEBI:33019, CC ChEBI:CHEBI:78442, ChEBI:CHEBI:78513, ChEBI:CHEBI:456215; CC EC=6.1.1.19; CC -!- SUBUNIT: Monomer. {ECO:0000269|PubMed:9736621}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250|UniProtKB:P54136}. CC Cytoplasm, cytosol {ECO:0000250|UniProtKB:P54136}. CC -!- MISCELLANEOUS: Present with 20600 molecules/cell in log phase SD CC medium. {ECO:0000269|PubMed:14562106}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase family. CC {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; U51032; AAB64777.1; -; Genomic_DNA. DR EMBL; BK006938; DAA12182.1; -; Genomic_DNA. DR PIR; S70106; S70106. DR RefSeq; NP_010628.3; NM_001180649.3. DR PDB; 1BS2; X-ray; 2.75 A; A=1-607. DR PDB; 1F7U; X-ray; 2.20 A; A=1-607. DR PDB; 1F7V; X-ray; 2.90 A; A=1-607. DR PDBsum; 1BS2; -. DR PDBsum; 1F7U; -. DR PDBsum; 1F7V; -. DR AlphaFoldDB; Q05506; -. DR SMR; Q05506; -. DR BioGRID; 32398; 158. DR DIP; DIP-5046N; -. DR IntAct; Q05506; 4. DR STRING; 4932.YDR341C; -. DR iPTMnet; Q05506; -. DR MaxQB; Q05506; -. DR PaxDb; 4932-YDR341C; -. DR PeptideAtlas; Q05506; -. DR TopDownProteomics; Q05506; -. DR EnsemblFungi; YDR341C_mRNA; YDR341C; YDR341C. DR GeneID; 851942; -. DR KEGG; sce:YDR341C; -. DR AGR; SGD:S000002749; -. DR SGD; S000002749; YDR341C. DR VEuPathDB; FungiDB:YDR341C; -. DR eggNOG; KOG1195; Eukaryota. DR GeneTree; ENSGT00530000063407; -. DR HOGENOM; CLU_006406_6_2_1; -. DR InParanoid; Q05506; -. DR OMA; YEFKWER; -. DR OrthoDB; 67085at2759; -. DR BioCyc; YEAST:G3O-29896-MONOMER; -. DR BRENDA; 6.1.1.19; 984. DR BioGRID-ORCS; 851942; 2 hits in 10 CRISPR screens. DR EvolutionaryTrace; Q05506; -. DR PRO; PR:Q05506; -. DR Proteomes; UP000002311; Chromosome IV. DR RNAct; Q05506; Protein. DR GO; GO:0005829; C:cytosol; IEA:UniProtKB-SubCell. DR GO; GO:0005739; C:mitochondrion; HDA:SGD. DR GO; GO:0004814; F:arginine-tRNA ligase activity; IDA:SGD. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0006420; P:arginyl-tRNA aminoacylation; IDA:SGD. DR GO; GO:0032543; P:mitochondrial translation; IBA:GO_Central. DR CDD; cd07956; Anticodon_Ia_Arg; 1. DR CDD; cd00671; ArgRS_core; 1. DR Gene3D; 3.30.1360.70; Arginyl tRNA synthetase N-terminal domain; 1. DR Gene3D; 3.40.50.620; HUPs; 1. DR HAMAP; MF_00123; Arg_tRNA_synth; 1. DR InterPro; IPR001412; aa-tRNA-synth_I_CS. DR InterPro; IPR001278; Arg-tRNA-ligase. DR InterPro; IPR005148; Arg-tRNA-synth_N. DR InterPro; IPR036695; Arg-tRNA-synth_N_sf. DR InterPro; IPR035684; ArgRS_core. DR InterPro; IPR008909; DALR_anticod-bd. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR009080; tRNAsynth_Ia_anticodon-bd. DR NCBIfam; TIGR00456; argS; 1. DR PANTHER; PTHR11956:SF5; ARGININE--TRNA LIGASE, CYTOPLASMIC-RELATED; 1. DR PANTHER; PTHR11956; ARGINYL-TRNA SYNTHETASE; 1. DR Pfam; PF03485; Arg_tRNA_synt_N; 1. DR Pfam; PF05746; DALR_1; 1. DR Pfam; PF00750; tRNA-synt_1d; 1. DR PRINTS; PR01038; TRNASYNTHARG. DR SMART; SM01016; Arg_tRNA_synt_N; 1. DR SMART; SM00836; DALR_1; 1. DR SUPFAM; SSF47323; Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases; 1. DR SUPFAM; SSF55190; Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain; 1. DR SUPFAM; SSF52374; Nucleotidylyl transferase; 1. DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1. PE 1: Evidence at protein level; KW 3D-structure; Acetylation; Aminoacyl-tRNA synthetase; ATP-binding; KW Cytoplasm; Ligase; Nucleotide-binding; Phosphoprotein; KW Protein biosynthesis; Reference proteome. FT INIT_MET 1 FT /note="Removed" FT /evidence="ECO:0007744|PubMed:22814378" FT CHAIN 2..607 FT /note="Arginine--tRNA ligase, cytoplasmic" FT /id="PRO_0000151664" FT REGION 59..60 FT /note="Interaction with tRNA" FT /evidence="ECO:0000269|PubMed:11060012" FT REGION 106..111 FT /note="Interaction with tRNA" FT /evidence="ECO:0000269|PubMed:11060012" FT REGION 484..498 FT /note="Interaction with tRNA" FT /evidence="ECO:0000269|PubMed:11060012" FT MOTIF 151..162 FT /note="'HIGH' region" FT BINDING 148..153 FT /ligand="L-arginine" FT /ligand_id="ChEBI:CHEBI:32682" FT /evidence="ECO:0000269|PubMed:11060012, FT ECO:0000269|PubMed:9736621, ECO:0007744|PDB:1BS2, FT ECO:0007744|PDB:1F7U" FT BINDING 162 FT /ligand="L-arginine" FT /ligand_id="ChEBI:CHEBI:32682" FT /evidence="ECO:0000269|PubMed:9736621, FT ECO:0007744|PDB:1BS2" FT BINDING 347 FT /ligand="L-arginine" FT /ligand_id="ChEBI:CHEBI:32682" FT /evidence="ECO:0000269|PubMed:11060012, FT ECO:0000269|PubMed:9736621, ECO:0007744|PDB:1BS2, FT ECO:0007744|PDB:1F7U" FT BINDING 351 FT /ligand="L-arginine" FT /ligand_id="ChEBI:CHEBI:32682" FT /evidence="ECO:0000269|PubMed:11060012, FT ECO:0000269|PubMed:9736621, ECO:0007744|PDB:1BS2, FT ECO:0007744|PDB:1F7U" FT BINDING 375 FT /ligand="L-arginine" FT /ligand_id="ChEBI:CHEBI:32682" FT /evidence="ECO:0000269|PubMed:11060012, FT ECO:0000269|PubMed:9736621, ECO:0007744|PDB:1BS2, FT ECO:0007744|PDB:1F7U" FT MOD_RES 2 FT /note="N-acetylalanine" FT /evidence="ECO:0007744|PubMed:22814378" FT MOD_RES 15 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:17330950, FT ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198" FT HELIX 3..13 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 19..22 FT /evidence="ECO:0007829|PDB:1F7U" FT TURN 27..29 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 31..47 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 51..54 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 55..57 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 64..66 FT /evidence="ECO:0007829|PDB:1F7U" FT STRAND 68..72 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 73..76 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 83..92 FT /evidence="ECO:0007829|PDB:1F7U" FT TURN 97..99 FT /evidence="ECO:0007829|PDB:1F7U" FT STRAND 100..106 FT /evidence="ECO:0007829|PDB:1F7U" FT STRAND 109..114 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 116..130 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 131..133 FT /evidence="ECO:0007829|PDB:1F7U" FT STRAND 144..148 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 160..162 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 163..178 FT /evidence="ECO:0007829|PDB:1F7U" FT STRAND 182..190 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 194..206 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 209..214 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 216..233 FT /evidence="ECO:0007829|PDB:1F7U" FT STRAND 235..238 FT /evidence="ECO:0007829|PDB:1BS2" FT TURN 240..242 FT /evidence="ECO:0007829|PDB:1F7U" FT STRAND 243..245 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 246..257 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 260..283 FT /evidence="ECO:0007829|PDB:1F7U" FT STRAND 289..293 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 294..296 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 299..311 FT /evidence="ECO:0007829|PDB:1F7U" FT STRAND 315..318 FT /evidence="ECO:0007829|PDB:1F7U" FT STRAND 321..325 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 326..328 FT /evidence="ECO:0007829|PDB:1F7U" FT TURN 331..333 FT /evidence="ECO:0007829|PDB:1F7U" FT STRAND 335..339 FT /evidence="ECO:0007829|PDB:1F7U" FT TURN 341..343 FT /evidence="ECO:0007829|PDB:1BS2" FT HELIX 347..362 FT /evidence="ECO:0007829|PDB:1F7U" FT STRAND 365..370 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 373..375 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 376..388 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 392..396 FT /evidence="ECO:0007829|PDB:1F7U" FT STRAND 397..400 FT /evidence="ECO:0007829|PDB:1F7U" FT STRAND 405..407 FT /evidence="ECO:0007829|PDB:1F7U" FT TURN 410..413 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 418..434 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 437..440 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 446..463 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 475..479 FT /evidence="ECO:0007829|PDB:1F7U" FT STRAND 482..485 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 486..502 FT /evidence="ECO:0007829|PDB:1F7U" FT TURN 503..505 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 508..511 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 516..518 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 522..531 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 534..544 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 547..567 FT /evidence="ECO:0007829|PDB:1F7U" FT HELIX 575..599 FT /evidence="ECO:0007829|PDB:1F7U" SQ SEQUENCE 607 AA; 69525 MW; 8349ABC0E30E50F1 CRC64; MASTANMISQ LKKLSIAEPA VAKDSHPDVN IVDLMRNYIS QELSKISGVD SSLIFPALEW TNTMERGDLL IPIPRLRIKG ANPKDLAVQW AEKFPCGDFL EKVEANGPFI QFFFNPQFLA KLVIPDILTR KEDYGSCKLV ENKKVIIEFS SPNIAKPFHA GHLRSTIIGG FLANLYEKLG WEVIRMNYLG DWGKQFGLLA VGFERYGNEE ALVKDPIHHL FDVYVRINKD IEEEGDSIPL EQSTNGKARE YFKRMEDGDE EALKIWKRFR EFSIEKYIDT YARLNIKYDV YSGESQVSKE SMLKAIDLFK EKGLTHEDKG AVLIDLTKFN KKLGKAIVQK SDGTTLYLTR DVGAAMDRYE KYHFDKMIYV IASQQDLHAA QFFEILKQMG FEWAKDLQHV NFGMVQGMST RKGTVVFLDN ILEETKEKMH EVMKKNENKY AQIEHPEEVA DLVGISAVMI QDMQGKRINN YEFKWERMLS FEGDTGPYLQ YAHSRLRSVE RNASGITQEK WINADFSLLK EPAAKLLIRL LGQYPDVLRN AIKTHEPTTV VTYLFKLTHQ VSSCYDVLWV AGQTEELATA RLALYGAARQ VLYNGMRLLG LTPVERM //