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Protein

Arylmalonate decarboxylase

Gene
N/A
Organism
Bordetella bronchiseptica (Alcaligenes bronchisepticus)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Catalytic activityi

2-aryl-2-methylmalonate = 2-arylpropanoate + CO2.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Decarboxylase, Lyase

Enzyme and pathway databases

BRENDAi4.1.1.76. 227.

Names & Taxonomyi

Protein namesi
Recommended name:
Arylmalonate decarboxylase (EC:4.1.1.76)
Short name:
AMDase
OrganismiBordetella bronchiseptica (Alcaligenes bronchisepticus)
Taxonomic identifieri518 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceaeBordetella

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 240240Arylmalonate decarboxylasePRO_0000064576Add
BLAST

Structurei

Secondary structure

1
240
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi8 – 158Combined sources
Helixi23 – 275Combined sources
Beta strandi33 – 375Combined sources
Helixi39 – 413Combined sources
Helixi45 – 517Combined sources
Helixi52 – 543Combined sources
Helixi55 – 6410Combined sources
Beta strandi67 – 726Combined sources
Helixi75 – 795Combined sources
Helixi83 – 9715Combined sources
Beta strandi101 – 1033Combined sources
Helixi104 – 11411Combined sources
Beta strandi118 – 1269Combined sources
Helixi128 – 14013Combined sources
Beta strandi144 – 1507Combined sources
Helixi156 – 1605Combined sources
Helixi164 – 17613Combined sources
Beta strandi182 – 1876Combined sources
Beta strandi189 – 1913Combined sources
Helixi196 – 2049Combined sources
Beta strandi208 – 2103Combined sources
Helixi211 – 22212Combined sources
Beta strandi231 – 2333Combined sources
Helixi235 – 2384Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2VLBX-ray1.92A/B/C/D1-240[»]
3DG9X-ray1.50A1-240[»]
3DTVX-ray2.10A/B/C/D1-240[»]
3EISX-ray2.10A/B/C/D1-240[»]
3IP8X-ray1.50A1-240[»]
3IXLX-ray1.45A1-240[»]
3IXMX-ray1.90A1-240[»]
ProteinModelPortaliQ05115.
SMRiQ05115. Positions 6-240.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ05115.

Family & Domainsi

Phylogenomic databases

KOiK06033.

Family and domain databases

InterProiIPR026286. MaiA/AMDase.
IPR011060. RibuloseP-bd_barrel.
[Graphical view]
PIRSFiPIRSF015736. MI. 1 hit.
SUPFAMiSSF51366. SSF51366. 1 hit.

Sequencei

Sequence statusi: Complete.

Q05115-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQQASTPTIG MIVPPAAGLV PADGARLYPD LPFIASGLGL GSVTPEGYDA
60 70 80 90 100
VIESVVDHAR RLQKQGAAVV SLMGTSLSFY RGAAFNAALT VAMREATGLP
110 120 130 140 150
CTTMSTAVLN GLRALGVRRV ALATAYIDDV NERLAAFLAE ESLVPTGCRS
160 170 180 190 200
LGITGVEAMA RVDTATLVDL CVRAFEAAPD SDGILLSCGG LLTLDAIPEV
210 220 230 240
ERRLGVPVVS SSPAGFWDAV RLAGGGAKAR PGYGRLFDES
Length:240
Mass (Da):24,735
Last modified:February 1, 1995 - v1
Checksum:i2514373725BDAA7F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
S54007 Genomic DNA. Translation: AAC60426.1.
D13116 Genomic DNA. Translation: BAA02419.1.
PIRiA48374. JS0754.
RefSeqiWP_059373149.1. NZ_BBVB01000006.1.

Genome annotation databases

KEGGiag:AAC60426.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
S54007 Genomic DNA. Translation: AAC60426.1.
D13116 Genomic DNA. Translation: BAA02419.1.
PIRiA48374. JS0754.
RefSeqiWP_059373149.1. NZ_BBVB01000006.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2VLBX-ray1.92A/B/C/D1-240[»]
3DG9X-ray1.50A1-240[»]
3DTVX-ray2.10A/B/C/D1-240[»]
3EISX-ray2.10A/B/C/D1-240[»]
3IP8X-ray1.50A1-240[»]
3IXLX-ray1.45A1-240[»]
3IXMX-ray1.90A1-240[»]
ProteinModelPortaliQ05115.
SMRiQ05115. Positions 6-240.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

KEGGiag:AAC60426.

Phylogenomic databases

KOiK06033.

Enzyme and pathway databases

BRENDAi4.1.1.76. 227.

Miscellaneous databases

EvolutionaryTraceiQ05115.

Family and domain databases

InterProiIPR026286. MaiA/AMDase.
IPR011060. RibuloseP-bd_barrel.
[Graphical view]
PIRSFiPIRSF015736. MI. 1 hit.
SUPFAMiSSF51366. SSF51366. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiAMDA_BORBO
AccessioniPrimary (citable) accession number: Q05115
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: July 6, 2016
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Direct protein sequencing

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.