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Q04ML3

- RS13_STRP2

UniProt

Q04ML3 - RS13_STRP2

Protein

30S ribosomal protein S13

Gene

rpsM

Organism
Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro
    3. tRNA binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding, tRNA-binding

    Enzyme and pathway databases

    BioCyciSPNE373153:GIX6-216-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S13UniRule annotation
    Gene namesi
    Name:rpsMUniRule annotation
    Ordered Locus Names:SPD_0216
    OrganismiStreptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)
    Taxonomic identifieri373153 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesStreptococcaceaeStreptococcus
    ProteomesiUP000001452: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 12112130S ribosomal protein S13PRO_0000306717Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome.UniRule annotation

    Protein-protein interaction databases

    STRINGi373153.SPD_0216.

    Structurei

    3D structure databases

    ProteinModelPortaliQ04ML3.
    SMRiQ04ML3. Positions 2-111.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S13P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0099.
    HOGENOMiHOG000039879.
    KOiK02952.
    OMAiQNTKNNS.
    OrthoDBiEOG618R01.

    Family and domain databases

    Gene3Di4.10.910.10. 1 hit.
    HAMAPiMF_01315. Ribosomal_S13_S18.
    InterProiIPR027437. 30s_Rbsml_prot_S13_C.
    IPR001892. Ribosomal_S13.
    IPR010979. Ribosomal_S13-like_H2TH.
    IPR019980. Ribosomal_S13_bac-type.
    IPR018269. Ribosomal_S13_CS.
    [Graphical view]
    PfamiPF00416. Ribosomal_S13. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002134. Ribosomal_S13. 1 hit.
    SUPFAMiSSF46946. SSF46946. 1 hit.
    TIGRFAMsiTIGR03631. bact_S13. 1 hit.
    PROSITEiPS00646. RIBOSOMAL_S13_1. 1 hit.
    PS50159. RIBOSOMAL_S13_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q04ML3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARIAGVDIP NDKRVVISLT YVYGIGLATS KKILAAAGIS EDVRVRDLTS    50
    DQEDAIRREV DAIKVEGDLR REVNLNIKRL MEIGSYRGIR HRRGLPVRGQ 100
    NTKNNARTRK GKAVAIAGKK K 121
    Length:121
    Mass (Da):13,422
    Last modified:November 14, 2006 - v1
    Checksum:iFAE5270C5DBD6A39
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000410 Genomic DNA. Translation: ABJ54343.1.
    RefSeqiYP_815735.1. NC_008533.1.

    Genome annotation databases

    EnsemblBacteriaiABJ54343; ABJ54343; SPD_0216.
    GeneIDi4442756.
    KEGGispd:SPD_0216.
    PATRICi19681414. VBIStrPne27904_0245.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000410 Genomic DNA. Translation: ABJ54343.1 .
    RefSeqi YP_815735.1. NC_008533.1.

    3D structure databases

    ProteinModelPortali Q04ML3.
    SMRi Q04ML3. Positions 2-111.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 373153.SPD_0216.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABJ54343 ; ABJ54343 ; SPD_0216 .
    GeneIDi 4442756.
    KEGGi spd:SPD_0216.
    PATRICi 19681414. VBIStrPne27904_0245.

    Phylogenomic databases

    eggNOGi COG0099.
    HOGENOMi HOG000039879.
    KOi K02952.
    OMAi QNTKNNS.
    OrthoDBi EOG618R01.

    Enzyme and pathway databases

    BioCyci SPNE373153:GIX6-216-MONOMER.

    Family and domain databases

    Gene3Di 4.10.910.10. 1 hit.
    HAMAPi MF_01315. Ribosomal_S13_S18.
    InterProi IPR027437. 30s_Rbsml_prot_S13_C.
    IPR001892. Ribosomal_S13.
    IPR010979. Ribosomal_S13-like_H2TH.
    IPR019980. Ribosomal_S13_bac-type.
    IPR018269. Ribosomal_S13_CS.
    [Graphical view ]
    Pfami PF00416. Ribosomal_S13. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002134. Ribosomal_S13. 1 hit.
    SUPFAMi SSF46946. SSF46946. 1 hit.
    TIGRFAMsi TIGR03631. bact_S13. 1 hit.
    PROSITEi PS00646. RIBOSOMAL_S13_1. 1 hit.
    PS50159. RIBOSOMAL_S13_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Avery's virulent serotype 2 strain D39 of Streptococcus pneumoniae and comparison with that of unencapsulated laboratory strain R6."
      Lanie J.A., Ng W.-L., Kazmierczak K.M., Andrzejewski T.M., Davidsen T.M., Wayne K.J., Tettelin H., Glass J.I., Winkler M.E.
      J. Bacteriol. 189:38-51(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: D39 / NCTC 7466.

    Entry informationi

    Entry nameiRS13_STRP2
    AccessioniPrimary (citable) accession number: Q04ML3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 2, 2007
    Last sequence update: November 14, 2006
    Last modified: October 1, 2014
    This is version 47 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3