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Q04ML3

- RS13_STRP2

UniProt

Q04ML3 - RS13_STRP2

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Protein
30S ribosomal protein S13
Gene
rpsM, SPD_0216
Organism
Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites By similarity.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro
  3. tRNA binding Source: UniProtKB-HAMAP
Complete GO annotation...

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciSPNE373153:GIX6-216-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S13
Gene namesi
Name:rpsM
Ordered Locus Names:SPD_0216
OrganismiStreptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)
Taxonomic identifieri373153 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesStreptococcaceaeStreptococcus
ProteomesiUP000001452: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12112130S ribosomal protein S13UniRule annotation
PRO_0000306717Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome By similarity.

Protein-protein interaction databases

STRINGi373153.SPD_0216.

Structurei

3D structure databases

ProteinModelPortaliQ04ML3.
SMRiQ04ML3. Positions 2-111.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0099.
HOGENOMiHOG000039879.
KOiK02952.
OMAiQNTKNNS.
OrthoDBiEOG618R01.

Family and domain databases

Gene3Di4.10.910.10. 1 hit.
HAMAPiMF_01315. Ribosomal_S13_S18.
InterProiIPR027437. 30s_Rbsml_prot_S13_C.
IPR001892. Ribosomal_S13.
IPR010979. Ribosomal_S13-like_H2TH.
IPR019980. Ribosomal_S13_bac-type.
IPR018269. Ribosomal_S13_CS.
[Graphical view]
PfamiPF00416. Ribosomal_S13. 1 hit.
[Graphical view]
PIRSFiPIRSF002134. Ribosomal_S13. 1 hit.
SUPFAMiSSF46946. SSF46946. 1 hit.
TIGRFAMsiTIGR03631. bact_S13. 1 hit.
PROSITEiPS00646. RIBOSOMAL_S13_1. 1 hit.
PS50159. RIBOSOMAL_S13_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q04ML3-1 [UniParc]FASTAAdd to Basket

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MARIAGVDIP NDKRVVISLT YVYGIGLATS KKILAAAGIS EDVRVRDLTS    50
DQEDAIRREV DAIKVEGDLR REVNLNIKRL MEIGSYRGIR HRRGLPVRGQ 100
NTKNNARTRK GKAVAIAGKK K 121
Length:121
Mass (Da):13,422
Last modified:November 14, 2006 - v1
Checksum:iFAE5270C5DBD6A39
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000410 Genomic DNA. Translation: ABJ54343.1.
RefSeqiYP_815735.1. NC_008533.1.

Genome annotation databases

EnsemblBacteriaiABJ54343; ABJ54343; SPD_0216.
GeneIDi4442756.
KEGGispd:SPD_0216.
PATRICi19681414. VBIStrPne27904_0245.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000410 Genomic DNA. Translation: ABJ54343.1 .
RefSeqi YP_815735.1. NC_008533.1.

3D structure databases

ProteinModelPortali Q04ML3.
SMRi Q04ML3. Positions 2-111.
ModBasei Search...

Protein-protein interaction databases

STRINGi 373153.SPD_0216.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABJ54343 ; ABJ54343 ; SPD_0216 .
GeneIDi 4442756.
KEGGi spd:SPD_0216.
PATRICi 19681414. VBIStrPne27904_0245.

Phylogenomic databases

eggNOGi COG0099.
HOGENOMi HOG000039879.
KOi K02952.
OMAi QNTKNNS.
OrthoDBi EOG618R01.

Enzyme and pathway databases

BioCyci SPNE373153:GIX6-216-MONOMER.

Family and domain databases

Gene3Di 4.10.910.10. 1 hit.
HAMAPi MF_01315. Ribosomal_S13_S18.
InterProi IPR027437. 30s_Rbsml_prot_S13_C.
IPR001892. Ribosomal_S13.
IPR010979. Ribosomal_S13-like_H2TH.
IPR019980. Ribosomal_S13_bac-type.
IPR018269. Ribosomal_S13_CS.
[Graphical view ]
Pfami PF00416. Ribosomal_S13. 1 hit.
[Graphical view ]
PIRSFi PIRSF002134. Ribosomal_S13. 1 hit.
SUPFAMi SSF46946. SSF46946. 1 hit.
TIGRFAMsi TIGR03631. bact_S13. 1 hit.
PROSITEi PS00646. RIBOSOMAL_S13_1. 1 hit.
PS50159. RIBOSOMAL_S13_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Avery's virulent serotype 2 strain D39 of Streptococcus pneumoniae and comparison with that of unencapsulated laboratory strain R6."
    Lanie J.A., Ng W.-L., Kazmierczak K.M., Andrzejewski T.M., Davidsen T.M., Wayne K.J., Tettelin H., Glass J.I., Winkler M.E.
    J. Bacteriol. 189:38-51(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: D39 / NCTC 7466.

Entry informationi

Entry nameiRS13_STRP2
AccessioniPrimary (citable) accession number: Q04ML3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 2, 2007
Last sequence update: November 14, 2006
Last modified: May 14, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi