Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Type II restriction endonuclease, putative

Gene

SPD_1079

Organism
Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. endonuclease activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

EndonucleaseImported, Hydrolase, Nuclease

Enzyme and pathway databases

BioCyciSPNE373153:GIX6-1079-MONOMER.

Protein family/group databases

REBASEi13755. SpnD39ORF1079AP.

Names & Taxonomyi

Protein namesi
Submitted name:
Type II restriction endonuclease, putativeImported
Gene namesi
Ordered Locus Names:SPD_1079Imported
OrganismiStreptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)Imported
Taxonomic identifieri373153 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesStreptococcaceaeStreptococcus
ProteomesiUP000001452 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi373153.SPD_1079.

Structurei

3D structure databases

ProteinModelPortaliQ04K98.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG13119.
HOGENOMiHOG000223784.
KOiK01155.
OMAiQVYGLAP.
OrthoDBiEOG6RC3KH.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR018306. Phage_T5_Orf172_DNA-bd.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF10544. T5orf172. 1 hit.
[Graphical view]
SMARTiSM00974. T5orf172. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF53335. SSF53335. 1 hit.

Sequencei

Sequence statusi: Complete.

Q04K98-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPVEIKTTKE IHPKIYAYTT PTVTSNEGWI KIGYTERDVT QRIKEQTHTA
60 70 80 90 100
HIATDVLWTG DAAYTEEPDK GKTFKDHDFH HFLSFHDVER RPKTEWFYFN
110 120 130 140 150
GTPEKSKNLF DKFVQHDLSG YQPGKGQDYT LRQEQEEAVA KTLAYFQEHA
160 170 180 190 200
GGKFLWNAKP RFGKTLSTYD LARRMEAVNV LIVTNRPAIA NSWYDDFETF
210 220 230 240 250
IAGQTTYKFV SESDSLKSRP ILSRQEFLGI LADDVRQLAF ISLQDLKGSV
260 270 280 290 300
YLGGEHDKLK WVTDLHWDLL VIDEAHEGVD TFKTDQAFNK IRRNFTLHLS
310 320 330 340 350
GTSFKALAKG DFTEEQIYNW SYADEQAAKY SWSLEQEEEN PYESLPQLNL
360 370 380 390 400
FTYQMSQMIG EKLEKGAQID GENIDYVFDL SEFFATDDKG KFIHEHDVRN
410 420 430 440 450
WLDTLSSNEK YPFSTKELRN ELKHTFWLLE RVASAKALKA LLEEHPIYEN
460 470 480 490 500
YEIVLAAGDG RMSEEDDKVK LKSLDLVRKA IAENDKTITL SVGQLTTGVT
510 520 530 540 550
IPEWTGVLML SNLKSPALYM QAAFRAQNPY SWSDNKGNHF RKERAYVFDF
560 570 580 590 600
APERTLILFD EFANNLSLVT AAGRGTSATR EENIRELLNF FPIIAEDRAG
610 620 630 640 650
KMVEIDAKAV LTTPRQIKAR EVLKRGFMSN LLFDNISGIF QASQTVLDIL
660 670 680 690 700
NELPVEKEGK VQDSSDLLDF SDVTVDDEGN AVVDHEIVVN QQMRLFGEKV
710 720 730 740 750
YGLGESVAEL VTKDEERTQK QLVNDLSKTV SSVIVEELKA DYSLKTRETE
760 770 780 790 800
QIKKQITATL ENEIRKNDIE RKISEAHIKQ ELQQQLKEAN DKAQKDKIQE
810 820 830 840 850
DLEKRLEENK LIHKEKLEQT LKKEVEKMPE KFIEQVEIKR VEQLKQSAQD
860 870 880 890 900
EIRDHLRGFA RTIPSFIMAY GDQTLTLDNF DAFVPEHVFY EVTGITIDQF
910 920 930 940 950
RYLRDGGQDF AGHLFDKATF DEAIQEFLRK KKELADYFKD QKEDIFDYIP
960 970 980 990 1000
PQKTNQIFTP KRVVKRMVDD LEKENPGIFD DPSKTFIDLY MKSGLYIAEL
1010 1020 1030 1040 1050
VKRLYNSNGL KEAFPNPEER LKHILEKQVY GFAPSEIIYN ISTNFIFGNL
1060 1070 1080
SKDISRKNFV LADTIPAAKE GSIQKLVDSY FENN
Length:1,084
Mass (Da):125,110
Last modified:November 13, 2006 - v1
Checksum:i67AA475EDF4D5BB4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000410 Genomic DNA. Translation: ABJ54671.1.
RefSeqiYP_816550.1. NC_008533.1.

Genome annotation databases

EnsemblBacteriaiABJ54671; ABJ54671; SPD_1079.
GeneIDi4443037.
KEGGispd:SPD_1079.
PATRICi19683334. VBIStrPne27904_1202.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000410 Genomic DNA. Translation: ABJ54671.1.
RefSeqiYP_816550.1. NC_008533.1.

3D structure databases

ProteinModelPortaliQ04K98.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi373153.SPD_1079.

Protein family/group databases

REBASEi13755. SpnD39ORF1079AP.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABJ54671; ABJ54671; SPD_1079.
GeneIDi4443037.
KEGGispd:SPD_1079.
PATRICi19683334. VBIStrPne27904_1202.

Phylogenomic databases

eggNOGiNOG13119.
HOGENOMiHOG000223784.
KOiK01155.
OMAiQVYGLAP.
OrthoDBiEOG6RC3KH.

Enzyme and pathway databases

BioCyciSPNE373153:GIX6-1079-MONOMER.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR018306. Phage_T5_Orf172_DNA-bd.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF10544. T5orf172. 1 hit.
[Graphical view]
SMARTiSM00974. T5orf172. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF53335. SSF53335. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of Avery's virulent serotype 2 strain D39 of Streptococcus pneumoniae and comparison with that of unencapsulated laboratory strain R6."
    Lanie J.A., Ng W.-L., Kazmierczak K.M., Andrzejewski T.M., Davidsen T.M., Wayne K.J., Tettelin H., Glass J.I., Winkler M.E.
    J. Bacteriol. 189:38-51(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: D39 / NCTC 7466Imported.

Entry informationi

Entry nameiQ04K98_STRP2
AccessioniPrimary (citable) accession number: Q04K98
Entry historyi
Integrated into UniProtKB/TrEMBL: November 13, 2006
Last sequence update: November 13, 2006
Last modified: March 3, 2015
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.