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Q04JW6 (Q04JW6_STRP2) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length484 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Ontologies

Keywords
   Molecular functionGlycosidase EMBL ABJ54813.1
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionalpha-amylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

calcium ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q04JW6 [UniParc].

Last modified November 14, 2006. Version 1.
Checksum: DA511868187A0FFC

FASTA48455,880
        10         20         30         40         50         60 
MQNQTLMQYF EWYLPHDGQH WTRLAENAPH LAHLGISHVW MPPAFKATNE KDVGYGVYDL 

        70         80         90        100        110        120 
FDLGEFNQKG TVRTKYGFKE DYLQAIQALK AQGIQPMADV VLNHKAAADH REAFQVIEVD 

       130        140        150        160        170        180 
PVDRTVELGE PFTINGWTSF TFDGRQDTYN GFHWHWYHFT GTDYDAKRSK SGIYLIQGDN 

       190        200        210        220        230        240 
KGWANEELVD NENGNYDYLM YADLDFKHPE VIQNIYDWAD WFMETTGVAG FRLDAVKHID 

       250        260        270        280        290        300 
SFFMRNFIRD MKEKYGDDFY VFGEFWNSDK EANLDYLEKT EEHFDLVDVR LHQNLFEASQ 

       310        320        330        340        350        360 
AGANYDLRGI FTDSLVELKP DKAVTFVDNH DTQRGQALES TVEEWFKPAA YALILLRQDG 

       370        380        390        400        410        420 
LPCVFYGDYY GISGQYAQQD FKEILDRLLA IRKDLAYGEQ NDYFDHANCI GWVRSGAENQ 

       430        440        450        460        470        480 
SPIAVLISND QENSKSMFVG QEWTNQTFVD LLGSHQGQVT IDEEGYGQFP VSARSVSVWA 


VNTI 

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References

[1]"Genome sequence of Avery's virulent serotype 2 strain D39 of Streptococcus pneumoniae and comparison with that of unencapsulated laboratory strain R6."
Lanie J.A., Ng W.L., Kazmierczak K.M., Andrzejewski T.M., Davidsen T.M., Wayne K.J., Tettelin H., Glass J.I., Winkler M.E.
J. Bacteriol. 189:38-51(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: D39 / NCTC 7466.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000410 Genomic DNA. Translation: ABJ54813.1.
RefSeqYP_816682.1. NC_008533.1.

3D structure databases

ProteinModelPortalQ04JW6.
SMRQ04JW6. Positions 2-480.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING373153.SPD_1215.

Protein family/group databases

CAZyGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABJ54813; ABJ54813; SPD_1215.
GeneID4443068.
KEGGspd:SPD_1215.
PATRIC19683638. VBIStrPne27904_1352.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHOG000094847.
KOK01176.
OMARATKYGD.
OrthoDBEOG65QWH3.

Enzyme and pathway databases

BioCycSPNE373153:GIX6-1215-MONOMER.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProIPR013776. A-amylase_thermo.
IPR015237. Alpha-amylase_C_pro.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
PIRSFPIRSF001021. Alph-amls_thrmst. 1 hit.
PRINTSPR00110. ALPHAAMYLASE.
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ04JW6_STRP2
AccessionPrimary (citable) accession number: Q04JW6
Entry history
Integrated into UniProtKB/TrEMBL: November 14, 2006
Last sequence update: November 14, 2006
Last modified: May 14, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)