Q04JM3 (Q04JM3_STRP2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Peptidoglycan GlcNAc deacetylase EMBL ABJ54084.1
EC=3.5.1.- EMBL ABJ54084.1

Gene names

Name:	pgdA EMBL ABJ54084.1
Ordered Locus Names:	SPD_1309

Organism

Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) [Complete proteome] [HAMAP] EMBL ABJ54084.1

Taxonomic identifier

373153 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Lactobacillales › Streptococcaceae › Streptococcus

Protein attributes

Sequence length	480 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Hydrolase EMBL ABJ54084.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q04JM3 [UniParc]. Last modified November 14, 2006. Version 1. Checksum: 45444EBF739DFE3A	FASTA	480	54,623
	10 20 30 40 50 60 MPNCIIEIIA QICYDINMNK SRLGRGRHGK TRHVLLALIG ILAISICLLG GFIAFKIYQQ 70 80 90 100 110 120 KSFEQKIESL KKEKDDQLSE GNQKEHFRQG QAEVIAYYPL QGEKVISSVR ELINQDVKDK 130 140 150 160 170 180 LESKDNLVFY YTEQEESGLK GVVNRNVTKQ IYDLVAFKIE ETEKTSLGKV HLTEDGQPFT 190 200 210 220 230 240 LDQLFSDASK AKEQLIKELT SFIEDKKIEQ DQSEQIVKNF SDQDLSAWNF DYKDSQIILY 250 260 270 280 290 300 PSPVVENLEE IALPVSAFFD VIQSSYLLEK DAALYQSYFD KKHQKVVALT FDDGPNPATT 310 320 330 340 350 360 PQVLETLAKY DIKATFFVLG KNVSGNEDLV KRIKSEGHVV GNHSWSHPIL SQLSLDEAKK 370 380 390 400 410 420 QITDTEDVLT KVLGSSSKLM RPPYGAITDD IRNSLDLSFI MWDVDSLDWK SKNEASILTE 430 440 450 460 470 480 IQHQVANGSI VLMHDIHSPT VNALPRVIEY LKNQGYTFVT IPEMLNTRLK AHELYYSRDE

References

[1]

"Genome sequence of Avery's virulent serotype 2 strain D39 of Streptococcus pneumoniae and comparison with that of unencapsulated laboratory strain R6." Lanie J.A., Ng W.-L., Kazmierczak K.M., Andrzejewski T.M., Davidsen T.M., Wayne K.J., Tettelin H., Glass J.I., Winkler M.E. J. Bacteriol. 189:38-51(2007) [PubMed: 17041037] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000410 Genomic DNA. Translation: ABJ54084.1.
RefSeq	YP_816775.1. NC_008533.1.
3D structure databases
ProteinModelPortal	Q04JM3.
SMR	Q04JM3. Positions 63-480.
ModBase	Search...
Protein-protein interaction databases
STRING	Q04JM3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EBSTRT00000020193; EBSTRP00000019433; EBSTRG00000020193.
GeneID	4441553.
GenomeReviews	Gene locus SPD_1309 in contig CP000410_GR.
KEGG	spd:SPD_1309.
PATRIC	19683836. VBIStrPne27904_1451.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0726.
GeneTree	EBGT00050000027091.
HOGENOM	HBG703418.
OMA	LVAFKIE.
ProtClustDB	CLSK884105.
Family and domain databases
InterPro	IPR011330. Glyco_hydro/deAcase_b/a-brl. IPR017219. Peptidoglycan_deacetylase. IPR002509. Polysac_deacetylase. [Graphical view]
Gene3D	G3DSA:3.20.20.370. Polysac_deacetylase. 1 hit.
KO	K01463.
Pfam	PF01522. Polysacc_deac_1. 1 hit. [Graphical view]
PIRSF	PIRSF037479. PG_GlcNAc_deacetylase. 1 hit.
SUPFAM	SSF88713. Glyco_hydro/deAcase_b/a-brl. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q04JM3_STRP2

Accession

Primary (citable) accession number: Q04JM3

Entry history

Integrated into UniProtKB/TrEMBL:	November 14, 2006
Last sequence update:	November 14, 2006
Last modified:	December 14, 2011
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)