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Q04FF6 (SYR_OENOB) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 53. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Arginine--tRNA ligase

EC=6.1.1.19
Alternative name(s):
Arginyl-tRNA synthetase
Short name=ArgRS
Gene names
Name:argS
Ordered Locus Names:OEOE_0899
OrganismOenococcus oeni (strain ATCC BAA-331 / PSU-1) [Complete proteome] [HAMAP]
Taxonomic identifier203123 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliLactobacillalesLeuconostocaceaeOenococcus

Protein attributes

Sequence length566 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). HAMAP-Rule MF_00123

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00123

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00123.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family.

Ontologies

Keywords
   Biological processProtein biosynthesis
   Cellular componentCytoplasm
   LigandATP-binding
Nucleotide-binding
   Molecular functionAminoacyl-tRNA synthetase
Ligase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processarginyl-tRNA aminoacylation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

arginine-tRNA ligase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 566566Arginine--tRNA ligase HAMAP-Rule MF_00123
PRO_1000018080

Regions

Motif121 – 13111"HIGH" region HAMAP-Rule MF_00123

Sequences

Sequence LengthMass (Da)Tools
Q04FF6 [UniParc].

Last modified November 14, 2006. Version 1.
Checksum: 297CECA7ACA53A22

FASTA56663,619
        10         20         30         40         50         60 
MNFTHIIAEK INQTLENTFD LDKLEKLVEK PKDLNRGDYA FPTFSLSAKF HEAPQKIALK 

        70         80         90        100        110        120 
IADEIDRTNF ANVKAVGPYV NFFIQRVEFT NQLLKEILLN DDFGRNNQGA GKKIVIDMSS 

       130        140        150        160        170        180 
PNIAKPMSMG HLRSTVIGEA ISKIAKANGY QTIKINFLGD WGTQFGLMIA AYKLWGDDKL 

       190        200        210        220        230        240 
INKNPVDELV KLYVKINKES ETDKSLKDSG RAWFKKLEDG DPEAVKLWNW FKSVSLKEFQ 

       250        260        270        280        290        300 
EVYDRLGVSF DSMNGEAFYN DKMEPVVKML ASKGLLTESQ GAEIVDLPNL LPKDNYPIAM 

       310        320        330        340        350        360 
IKRSDGATQY ITRDLASAIY RHDAYDFAKS LYVVGAEQKD HFDQMKAILK LAGDDWADDI 

       370        380        390        400        410        420 
EHIGFGMITM NGKKMSTRKG NIVPLVDVLD TARQLAAEQI SEKNPGLENA DHVAEEVGAG 

       430        440        450        460        470        480 
AVVFNDLQKD RNLSIDFNLE KIVQFEGDTG PYVQYTHARA MSILRKSGQQ AILNTGVTFV 

       490        500        510        520        530        540 
DEEAWPIVSR LSAYPEMIKR AWQLREPSIV AKYLLSLARD FNSYYAHTKI LVNNEKMQSR 

       550        560 
LSLVQGVCSV LKSGLNLLGV SAPNQM 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000411 Genomic DNA. Translation: ABJ56816.1.
RefSeqYP_810481.1. NC_008528.1.

3D structure databases

ProteinModelPortalQ04FF6.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING203123.OEOE_0899.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABJ56816; ABJ56816; OEOE_0899.
GeneID4415259.
KEGGooe:OEOE_0899.
PATRIC22799963. VBIOenOen113004_0913.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0018.
HOGENOMHOG000247211.
KOK01887.
OMACEDRGAL.
OrthoDBEOG6JB13C.

Enzyme and pathway databases

BioCycOOEN203123:GHNL-899-MONOMER.

Family and domain databases

Gene3D1.10.730.10. 1 hit.
3.30.1360.70. 1 hit.
3.40.50.620. 1 hit.
HAMAPMF_00123. Arg_tRNA_synth.
InterProIPR001278. Arg-tRNA-ligase.
IPR005148. Arg-tRNA-synth_N.
IPR008909. DALR_anticod-bd.
IPR014729. Rossmann-like_a/b/a_fold.
IPR009080. tRNAsynth_1a_anticodon-bd.
[Graphical view]
PANTHERPTHR11956. PTHR11956. 1 hit.
PfamPF03485. Arg_tRNA_synt_N. 1 hit.
PF05746. DALR_1. 1 hit.
PF00750. tRNA-synt_1d. 1 hit.
[Graphical view]
PRINTSPR01038. TRNASYNTHARG.
SMARTSM01016. Arg_tRNA_synt_N. 1 hit.
SM00836. DALR_1. 1 hit.
[Graphical view]
SUPFAMSSF47323. SSF47323. 1 hit.
SSF55190. SSF55190. 1 hit.
TIGRFAMsTIGR00456. argS. 1 hit.
ProtoNetSearch...

Entry information

Entry nameSYR_OENOB
AccessionPrimary (citable) accession number: Q04FF6
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: November 14, 2006
Last modified: July 9, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Aminoacyl-tRNA synthetases

List of aminoacyl-tRNA synthetase entries