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Protein

Homeobox protein HAT3.1

Gene

HAT3.1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

Binds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri265 – 32258PHD-typePROSITE-ProRule annotationAdd
BLAST
DNA bindingi614 – 67360HomeoboxPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  • DNA binding Source: TAIR
  • sequence-specific DNA binding Source: TAIR
  • transcription factor activity, sequence-specific DNA binding Source: TAIR
  • zinc ion binding Source: InterPro

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Homeobox protein HAT3.1
Gene namesi
Name:HAT3.1
Ordered Locus Names:At3g19510
ORF Names:MLD14.25, MLD14.37
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G19510.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 723723Homeobox protein HAT3.1PRO_0000049142Add
BLAST

Proteomic databases

PaxDbiQ04996.
PRIDEiQ04996.

PTM databases

iPTMnetiQ04996.

Expressioni

Tissue specificityi

Primarily detected in root tissue.

Gene expression databases

GenevisibleiQ04996. AT.

Interactioni

Protein-protein interaction databases

BioGridi6818. 3 interactions.
IntActiQ04996. 2 interactions.
MINTiMINT-145123.
STRINGi3702.AT3G19510.1.

Structurei

3D structure databases

ProteinModelPortaliQ04996.
SMRiQ04996. Positions 264-322.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi362 – 564203Asp-richAdd
BLAST

Sequence similaritiesi

Belongs to the PHD-associated homeobox family.Curated
Contains 1 homeobox DNA-binding domain.PROSITE-ProRule annotation
Contains 1 PHD-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri265 – 32258PHD-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Homeobox, Zinc-finger

Phylogenomic databases

eggNOGiKOG0490. Eukaryota.
KOG4299. Eukaryota.
ENOG410XQQA. LUCA.
HOGENOMiHOG000112850.
InParanoidiQ04996.
OMAiGNGEIEN.
OrthoDBiEOG093608QL.
PhylomeDBiQ04996.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
3.30.40.10. 1 hit.
InterProiIPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
IPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR019787. Znf_PHD-finger.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF00046. Homeobox. 1 hit.
PF00628. PHD. 1 hit.
[Graphical view]
SMARTiSM00389. HOX. 1 hit.
SM00249. PHD. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF57903. SSF57903. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
PS01359. ZF_PHD_1. 1 hit.
PS50016. ZF_PHD_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q04996-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYKAVSKRVT RSSGSGLKQT NVDNGGEISP TVDRVSEQGK SSEAGSHMPT
60 70 80 90 100
DANGNGHLHH EIMDHGKGNE EQKPTPQTVK KDSNTNTKFS GSHRELVIGL
110 120 130 140 150
PCRGQFEIHN RSRASTSSKR LGGGGERNVL FASHKRAQRS KEDAGPSSVV
160 170 180 190 200
ANSTPVGRPK KKNKTMNKGQ VREDDEYTRI KKKLRYFLNR INYEQSLIDA
210 220 230 240 250
YSLEGWKGSS LEKIRPEKEL ERATKEILRR KLKIRDLFQH LDTLCAEGSL
260 270 280 290 300
PESLFDTDGE ISSEDIFCAK CGSKDLSVDN DIILCDGFCD RGFHQYCLEP
310 320 330 340 350
PLRKEDIPPD DEGWLCPGCD CKDDSLDLLN DSLGTKFSVS DSWEKIFPEA
360 370 380 390 400
AAALVGGGQN LDCDLPSDDS DDEEYDPDCL NDNENDEDGS DDNEESENED
410 420 430 440 450
GSSDETEFTS ASDEMIESFK EGKDIMKDVM ALPSDDSEDD DYDPDAPTCD
460 470 480 490 500
DDKESSNSDC TSDTEDLETS FKGDETNQQA EDTPLEDPGR QTSQLQGDAI
510 520 530 540 550
LESDVGLDDG PAGVSRRRNV ERLDYKKLYD EEYDNVPTSS SDDDDWDKTA
560 570 580 590 600
RMGKEDSESE DEGDTVPLKQ SSNAEDHTSK KLIRKSKRAD KKDTLEMPQE
610 620 630 640 650
GPGENGGSGE IEKSSSSACK QTDPKTQRLY ISFQENQYPD KATKESLAKE
660 670 680 690 700
LQMTVKQVNN WFKHRRWSIN SKPLVSEENV EKLKTGKEGE CETSVAGSSK
710 720
QTMETESVAE KPTNTGSRKR RRK
Length:723
Mass (Da):80,461
Last modified:May 29, 2007 - v3
Checksum:iCBA7D4C8757FDECE
GO

Sequence cautioni

The sequence BAB02476 differs from that shown. Reason: Erroneous initiation. Curated
The sequence CAA49263 differs from that shown. Reason: Frameshift at positions 62, 230 and 236. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti368 – 3681D → A in CAA49263 (PubMed:8106082).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X69512 mRNA. Translation: CAA49263.1. Frameshift.
AB025624 Genomic DNA. Translation: BAB02476.1. Different initiation.
CP002686 Genomic DNA. Translation: AEE76250.1.
AK117105 mRNA. Translation: BAC41784.1.
BT005965 mRNA. Translation: AAO64900.1.
PIRiS31437.
RefSeqiNP_188582.1. NM_112838.3.
UniGeneiAt.19694.

Genome annotation databases

EnsemblPlantsiAT3G19510.1; AT3G19510.1; AT3G19510.
GeneIDi821485.
GrameneiAT3G19510.1; AT3G19510.1; AT3G19510.
KEGGiath:AT3G19510.

Cross-referencesi

Web resourcesi

PlantsUBQ

A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X69512 mRNA. Translation: CAA49263.1. Frameshift.
AB025624 Genomic DNA. Translation: BAB02476.1. Different initiation.
CP002686 Genomic DNA. Translation: AEE76250.1.
AK117105 mRNA. Translation: BAC41784.1.
BT005965 mRNA. Translation: AAO64900.1.
PIRiS31437.
RefSeqiNP_188582.1. NM_112838.3.
UniGeneiAt.19694.

3D structure databases

ProteinModelPortaliQ04996.
SMRiQ04996. Positions 264-322.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi6818. 3 interactions.
IntActiQ04996. 2 interactions.
MINTiMINT-145123.
STRINGi3702.AT3G19510.1.

PTM databases

iPTMnetiQ04996.

Proteomic databases

PaxDbiQ04996.
PRIDEiQ04996.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G19510.1; AT3G19510.1; AT3G19510.
GeneIDi821485.
GrameneiAT3G19510.1; AT3G19510.1; AT3G19510.
KEGGiath:AT3G19510.

Organism-specific databases

TAIRiAT3G19510.

Phylogenomic databases

eggNOGiKOG0490. Eukaryota.
KOG4299. Eukaryota.
ENOG410XQQA. LUCA.
HOGENOMiHOG000112850.
InParanoidiQ04996.
OMAiGNGEIEN.
OrthoDBiEOG093608QL.
PhylomeDBiQ04996.

Miscellaneous databases

PROiQ04996.

Gene expression databases

GenevisibleiQ04996. AT.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
3.30.40.10. 1 hit.
InterProiIPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
IPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR019787. Znf_PHD-finger.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF00046. Homeobox. 1 hit.
PF00628. PHD. 1 hit.
[Graphical view]
SMARTiSM00389. HOX. 1 hit.
SM00249. PHD. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF57903. SSF57903. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
PS01359. ZF_PHD_1. 1 hit.
PS50016. ZF_PHD_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiHAT31_ARATH
AccessioniPrimary (citable) accession number: Q04996
Secondary accession number(s): Q8GZA9, Q9LT66
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: May 29, 2007
Last modified: September 7, 2016
This is version 134 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.