Reviewed, UniProtKB/Swiss-Prot Q04978 (YMF3_YEAST)

Names and origin

Protein names

Recommended name:
    Uncharacterized protein YML053C

Gene names

Ordered Locus Names:	YML053C
ORF Names:	YM9958.09C

Organism

Saccharomyces cerevisiae (Baker's yeast) [Complete proteome]

Taxonomic identifier

4932 [NCBI]

Taxonomic lineage

Eukaryota › Fungi › Dikarya › Ascomycota › Saccharomycotina › Saccharomycetes › Saccharomycetales › Saccharomycetaceae › Saccharomyces

Protein attributes

Sequence length	212 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Miscellaneous

Present with 656 molecules/cell in log phase SD medium. Ref.3

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Cellular component	cytoplasm Inferred from direct assay. Source: SGD nucleus Inferred from direct assay. Source: SGD
Molecular function	protein binding Inferred from physical interaction. Source: IntAct
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
TDH2	P00358	2	EBI-27823,EBI-7212

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 212	212	Uncharacterized protein YML053C		PRO_0000203254

Sequences

	Sequence		Length	Mass (Da)
	Q04978-1 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: 0CE50B99EA7ABF23	FASTA	212	23,943
	10 20 30 40 50 60 MLSYYEHNTA FQTNNCNSGS NAATTYNSDA NNDTIMNKRK NDHFEFDTHT FYQRSKRTKR 70 80 90 100 110 120 DSVSTKFSVG SGCANLNNNN NNIIINNNNN NNNNNNNHNH NNSNNTATYN NIHYKKNIEI 130 140 150 160 170 180 CPLKPVSMHH TMNSRLLNES EFYSETEEYM IHGYFGNTNR DITGTSPTGS ASIIQHQYHL 190 200 210 LPSQSIIASQ APGTAMAALT NNNIANDYMD ID

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII." Bowman S., Churcher C.M., Badcock K., Brown D., Chillingworth T., Connor R., Dedman K., Devlin K., Gentles S., Hamlin N., Hunt S., Jagels K., Lye G., Moule S., Odell C., Pearson D., Rajandream M.A., Rice P. , Skelton J., Walsh S.V., Whitehead S., Barrell B.G. Nature 387:90-93(1997) [PubMed: 9169872] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 204511 / S288c / AB972.
[2]	"Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae." Hu Y., Rolfs A., Bhullar B., Murthy T.V.S., Zhu C., Berger M.F., Camargo A.A., Kelley F., McCarron S., Jepson D., Richardson A., Raphael J., Moreira D., Taycher E., Zuo D., Mohr S., Kane M.F., Williamson J. , Simpson A.J.G., Bulyk M.L., Harlow E., Marsischky G., Kolodner R.D., LaBaer J. Genome Res. 17:536-543(2007) [PubMed: 17322287] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: ATCC 204508 / S288c.
[3]	"Global analysis of protein expression in yeast." Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S. Nature 425:737-741(2003) [PubMed: 14562106] [Abstract] Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBLGenBankDDBJ	Z46729 Genomic DNA. Translation: CAA86722.1. AY557974 Genomic DNA. Translation: AAS56300.1.
PIR	S49807.
RefSeq	NP_013659.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
DIP	DIP-1950N.
IntAct	Q04978. 3 interactions.
STRING	Q04978.
Genome annotation databases
Ensembl	YML053C; YML053C; YML053C; Saccharomyces cerevisiae. [Genome view]
GeneID	854952.
KEGG	sce:YML053C.
NMPDR	fig|4932.3.peg.4698.
Organism-specific databases
CYGD	YML053c.
SGD	S000004517. YML053C.
Phylogenomic databases
OrthoDB	EOG9ZCVNS.
Gene expression databases
ArrayExpress	Q04978.
Genevestigator	Q04978.
GermOnline	YML053C. Saccharomyces cerevisiae.
Family and domain databases
ProtoNet	Search...
Other Resources
NextBio	978021.

Entry information

Entry name

YMF3_YEAST

Accession

Primary (citable) accession number: Q04978

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	December 15, 2009
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

FPAP (Fungal Proteome Annotation Project)