ID NTE1_YEAST Reviewed; 1679 AA. AC Q04958; D6VZB4; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 27-MAR-2024, entry version 178. DE RecName: Full=Lysophospholipase NTE1; DE EC=3.1.1.5 {ECO:0000269|PubMed:15044461}; DE AltName: Full=Intracellular phospholipase B; DE AltName: Full=Neuropathy target esterase homolog; GN Name=NTE1; OrderedLocusNames=YML059C; ORFNames=YM9958.03C; OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; OC Saccharomycetales; Saccharomycetaceae; Saccharomyces. OX NCBI_TaxID=559292; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 204508 / S288c; RX PubMed=9169872; RA Bowman S., Churcher C.M., Badcock K., Brown D., Chillingworth T., RA Connor R., Dedman K., Devlin K., Gentles S., Hamlin N., Hunt S., Jagels K., RA Lye G., Moule S., Odell C., Pearson D., Rajandream M.A., Rice P., RA Skelton J., Walsh S.V., Whitehead S., Barrell B.G.; RT "The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII."; RL Nature 387:90-93(1997). RN [2] RP GENOME REANNOTATION. RC STRAIN=ATCC 204508 / S288c; RX PubMed=24374639; DOI=10.1534/g3.113.008995; RA Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R., RA Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S., RA Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M., Cherry J.M.; RT "The reference genome sequence of Saccharomyces cerevisiae: Then and now."; RL G3 (Bethesda) 4:389-398(2014). RN [3] RP SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS]. RX PubMed=14562095; DOI=10.1038/nature02026; RA Huh W.-K., Falvo J.V., Gerke L.C., Carroll A.S., Howson R.W., RA Weissman J.S., O'Shea E.K.; RT "Global analysis of protein localization in budding yeast."; RL Nature 425:686-691(2003). RN [4] RP LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS]. RX PubMed=14562106; DOI=10.1038/nature02046; RA Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., RA O'Shea E.K., Weissman J.S.; RT "Global analysis of protein expression in yeast."; RL Nature 425:737-741(2003). RN [5] RP FUNCTION, CATALYTIC ACTIVITY, SUBCELLULAR LOCATION, ACTIVITY REGULATION, RP AND MUTAGENESIS OF SER-1406. RX PubMed=15044461; DOI=10.1074/jbc.m400830200; RA Zaccheo O., Dinsdale D., Meacock P.A., Glynn P.; RT "Neuropathy target esterase and its yeast homologue degrade RT phosphatidylcholine to glycerophosphocholine in living cells."; RL J. Biol. Chem. 279:24024-24033(2004). RN [6] RP FUNCTION, AND ACTIVITY REGULATION. RX PubMed=15611060; DOI=10.1074/jbc.m413999200; RA Fernandez-Murray J.P., McMaster C.R.; RT "Nte1p-mediated deacylation of phosphatidylcholine functionally interacts RT with Sec14p."; RL J. Biol. Chem. 280:8544-8552(2005). RN [7] RP FUNCTION. RX PubMed=16777854; DOI=10.1074/jbc.m603548200; RA Gaspar M.L., Aregullin M.A., Jesch S.A., Henry S.A.; RT "Inositol induces a profound alteration in the pattern and rate of RT synthesis and turnover of membrane lipids in Saccharomyces cerevisiae."; RL J. Biol. Chem. 281:22773-22785(2006). RN [8] RP TOPOLOGY [LARGE SCALE ANALYSIS]. RC STRAIN=ATCC 208353 / W303-1A; RX PubMed=16847258; DOI=10.1073/pnas.0604075103; RA Kim H., Melen K., Oesterberg M., von Heijne G.; RT "A global topology map of the Saccharomyces cerevisiae membrane proteome."; RL Proc. Natl. Acad. Sci. U.S.A. 103:11142-11147(2006). RN [9] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-634, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC STRAIN=ADR376; RX PubMed=17330950; DOI=10.1021/pr060559j; RA Li X., Gerber S.A., Rudner A.D., Beausoleil S.A., Haas W., Villen J., RA Elias J.E., Gygi S.P.; RT "Large-scale phosphorylation analysis of alpha-factor-arrested RT Saccharomyces cerevisiae."; RL J. Proteome Res. 6:1190-1197(2007). RN [10] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-634 AND THR-803, AND RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=18407956; DOI=10.1074/mcp.m700468-mcp200; RA Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.; RT "A multidimensional chromatography technology for in-depth phosphoproteome RT analysis."; RL Mol. Cell. Proteomics 7:1389-1396(2008). RN [11] RP FUNCTION. RX PubMed=19841481; DOI=10.1074/jbc.m109.063958; RA Fernandez-Murray J.P., Gaspard G.J., Jesch S.A., McMaster C.R.; RT "NTE1-encoded phosphatidylcholine phospholipase B regulates transcription RT of phospholipid biosynthetic genes."; RL J. Biol. Chem. 284:36034-36046(2009). RN [12] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-300; SER-312; SER-632; RP SER-634; SER-653; SER-661; SER-670; SER-680 AND SER-739, AND IDENTIFICATION RP BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=19779198; DOI=10.1126/science.1172867; RA Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.; RT "Global analysis of Cdk1 substrate phosphorylation sites provides insights RT into evolution."; RL Science 325:1682-1686(2009). RN [13] RP SUBCELLULAR LOCATION. RX PubMed=24868093; DOI=10.1194/jlr.m050229; RA Currie E., Guo X., Christiano R., Chitraju C., Kory N., Harrison K., RA Haas J., Walther T.C., Farese R.V. Jr.; RT "High-confidence proteomic analysis of yeast lipid droplets identifies RT additional droplet proteins and reveals connections to dolichol synthesis RT and sterol acetylation."; RL J. Lipid Res. 55:1465-1477(2014). CC -!- FUNCTION: Intracellular phospholipase B that catalyzes the double CC deacylation of phosphatidylcholine (PC) to glycerophosphocholine CC (GroPCho). Plays an important role in membrane lipid homeostasis. CC Responsible for the rapid PC turnover in response to inositol, elevated CC temperatures, or when choline is present in the growth medium CC (PubMed:15044461, PubMed:15611060, PubMed:16777854). NTE1 activity CC impacts the repressing transcriptional activity of OPI1, the main CC regulator of phospholipid synthesis gene transcription CC (PubMed:19841481). {ECO:0000269|PubMed:15044461, CC ECO:0000269|PubMed:15611060, ECO:0000269|PubMed:16777854, CC ECO:0000269|PubMed:19841481}. CC -!- CATALYTIC ACTIVITY: CC Reaction=a 1-acyl-sn-glycero-3-phosphocholine + H2O = a fatty acid + CC H(+) + sn-glycerol 3-phosphocholine; Xref=Rhea:RHEA:15177, CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:16870, CC ChEBI:CHEBI:28868, ChEBI:CHEBI:58168; EC=3.1.1.5; CC Evidence={ECO:0000269|PubMed:15044461}; CC PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:15178; CC Evidence={ECO:0000305|PubMed:15044461}; CC -!- CATALYTIC ACTIVITY: CC Reaction=a 1,2-diacyl-sn-glycero-3-phosphocholine + 2 H2O = 2 a CC carboxylate + 2 H(+) + sn-glycerol 3-phosphocholine; CC Xref=Rhea:RHEA:32907, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, CC ChEBI:CHEBI:16870, ChEBI:CHEBI:29067, ChEBI:CHEBI:57643; CC Evidence={ECO:0000269|PubMed:15044461}; CC PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:32908; CC Evidence={ECO:0000305|PubMed:15044461}; CC -!- ACTIVITY REGULATION: Positively regulated by SEC14. Inhibited by CC organophosphorus esters in the order phenyl saligenin phosphate (PSP) > CC phenyldipentyl phosphinate (PDPP) = diisopropyl fluorophosphate (DFP) > CC and paraoxon (PXN). {ECO:0000269|PubMed:15044461, CC ECO:0000269|PubMed:15611060}. CC -!- SUBCELLULAR LOCATION: Endoplasmic reticulum membrane CC {ECO:0000269|PubMed:14562095, ECO:0000269|PubMed:15044461}; Multi-pass CC membrane protein {ECO:0000269|PubMed:14562095, CC ECO:0000269|PubMed:15044461}. Lipid droplet CC {ECO:0000269|PubMed:24868093}. CC -!- MISCELLANEOUS: Present with 521 molecules/cell in log phase SD medium. CC {ECO:0000269|PubMed:14562106}. CC -!- SIMILARITY: Belongs to the NTE family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; Z46729; CAA86716.1; -; Genomic_DNA. DR EMBL; BK006946; DAA09838.1; -; Genomic_DNA. DR PIR; S49802; S49802. DR RefSeq; NP_013652.1; NM_001182418.1. DR AlphaFoldDB; Q04958; -. DR SMR; Q04958; -. DR BioGRID; 35107; 100. DR DIP; DIP-5949N; -. DR IntAct; Q04958; 16. DR MINT; Q04958; -. DR STRING; 4932.YML059C; -. DR SwissLipids; SLP:000000073; -. DR GlyGen; Q04958; 4 sites, 1 O-linked glycan (4 sites). DR iPTMnet; Q04958; -. DR MaxQB; Q04958; -. DR PaxDb; 4932-YML059C; -. DR PeptideAtlas; Q04958; -. DR TopDownProteomics; Q04958; -. DR EnsemblFungi; YML059C_mRNA; YML059C; YML059C. DR GeneID; 854943; -. DR KEGG; sce:YML059C; -. DR AGR; SGD:S000004524; -. DR SGD; S000004524; NTE1. DR VEuPathDB; FungiDB:YML059C; -. DR eggNOG; KOG2968; Eukaryota. DR GeneTree; ENSGT00940000168388; -. DR HOGENOM; CLU_000960_1_1_1; -. DR InParanoid; Q04958; -. DR OMA; SSGYVWR; -. DR OrthoDB; 5303733at2759; -. DR BioCyc; MetaCyc:G3O-32654-MONOMER; -. DR BioCyc; YEAST:G3O-32654-MONOMER; -. DR Reactome; R-SCE-6814848; Glycerophospholipid catabolism. DR BioGRID-ORCS; 854943; 2 hits in 10 CRISPR screens. DR PRO; PR:Q04958; -. DR Proteomes; UP000002311; Chromosome XIII. DR RNAct; Q04958; Protein. DR GO; GO:0005783; C:endoplasmic reticulum; IDA:SGD. DR GO; GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005811; C:lipid droplet; IEA:UniProtKB-SubCell. DR GO; GO:0004622; F:lysophospholipase activity; IDA:SGD. DR GO; GO:0102545; F:phosphatidyl phospholipase B activity; IEA:UniProtKB-EC. DR GO; GO:0034638; P:phosphatidylcholine catabolic process; IMP:SGD. DR GO; GO:0071071; P:regulation of phospholipid biosynthetic process; IMP:SGD. DR CDD; cd00038; CAP_ED; 2. DR CDD; cd07227; Pat_Fungal_NTE1; 1. DR Gene3D; 3.40.1090.10; Cytosolic phospholipase A2 catalytic domain; 2. DR Gene3D; 2.60.120.10; Jelly Rolls; 3. DR InterPro; IPR016035; Acyl_Trfase/lysoPLipase. DR InterPro; IPR000595; cNMP-bd_dom. DR InterPro; IPR018490; cNMP-bd_dom_sf. DR InterPro; IPR001423; LysoPLipase_patatin_CS. DR InterPro; IPR002641; PNPLA_dom. DR InterPro; IPR014710; RmlC-like_jellyroll. DR PANTHER; PTHR14226:SF29; NEUROPATHY TARGET ESTERASE SWS; 1. DR PANTHER; PTHR14226; NEUROPATHY TARGET ESTERASE/SWISS CHEESE D.MELANOGASTER; 1. DR Pfam; PF00027; cNMP_binding; 2. DR Pfam; PF01734; Patatin; 1. DR SMART; SM00100; cNMP; 1. DR SUPFAM; SSF51206; cAMP-binding domain-like; 3. DR SUPFAM; SSF52151; FabD/lysophospholipase-like; 1. DR PROSITE; PS50042; CNMP_BINDING_3; 2. DR PROSITE; PS51635; PNPLA; 1. DR PROSITE; PS01237; UPF0028; 1. PE 1: Evidence at protein level; KW Endoplasmic reticulum; Hydrolase; Lipid degradation; Lipid droplet; KW Lipid metabolism; Membrane; Phosphoprotein; Reference proteome; Repeat; KW Transmembrane; Transmembrane helix. FT CHAIN 1..1679 FT /note="Lysophospholipase NTE1" FT /id="PRO_0000172528" FT TOPO_DOM 1..49 FT /note="Cytoplasmic" FT /evidence="ECO:0000305|PubMed:16847258" FT TRANSMEM 50..70 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 71..103 FT /note="Lumenal" FT /evidence="ECO:0000305|PubMed:16847258" FT TRANSMEM 104..124 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 125..1679 FT /note="Cytoplasmic" FT /evidence="ECO:0000269|PubMed:16847258" FT DOMAIN 1373..1537 FT /note="PNPLA" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01161" FT REGION 1..21 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 261..304 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 498..527 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 586..672 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 775..800 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 855..882 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOTIF 1377..1382 FT /note="GXGXXG" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01161" FT MOTIF 1404..1408 FT /note="GXSXG" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01161" FT MOTIF 1524..1526 FT /note="DGA/G" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01161" FT COMPBIAS 261..276 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 277..295 FT /note="Acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 586..655 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 855..876 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT ACT_SITE 1406 FT /note="Nucleophile" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01161" FT ACT_SITE 1524 FT /note="Proton acceptor" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01161" FT BINDING 803..947 FT /ligand="a nucleoside 3',5'-cyclic phosphate" FT /ligand_id="ChEBI:CHEBI:58464" FT /ligand_label="1" FT BINDING 943..1074 FT /ligand="a nucleoside 3',5'-cyclic phosphate" FT /ligand_id="ChEBI:CHEBI:58464" FT /ligand_label="2" FT MOD_RES 300 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:19779198" FT MOD_RES 312 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:19779198" FT MOD_RES 632 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:19779198" FT MOD_RES 634 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:17330950, FT ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198" FT MOD_RES 653 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:19779198" FT MOD_RES 661 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:19779198" FT MOD_RES 670 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:19779198" FT MOD_RES 680 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:19779198" FT MOD_RES 739 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:19779198" FT MOD_RES 803 FT /note="Phosphothreonine" FT /evidence="ECO:0007744|PubMed:18407956" FT MUTAGEN 1406 FT /note="S->A: Loss of esterase activity." FT /evidence="ECO:0000269|PubMed:15044461" SQ SEQUENCE 1679 AA; 187133 MW; 550FFCD4ACAF8E25 CRC64; MRSMNCTTNN TNNTGQNTKN SLGSSFNSSN YTSYRFQTCL TDQIISEAQT WSLSSLFNFS WVVSYFVMGA SRMIFRYGWY LATLSLLRIP KWIFFKLHHV QFTLSFWLIL FALAVIVFVT YTIMKERILS QYKRLTPEFL PLENTGKSGS SANINAASTQ SANAPPAIGS STTGASSIID SKKHSLKDGN ENETFLSSYL DQFLSAIKIF GYLEKPVFHD LTKNMKTQKM DEGEILLLDS TIGFAIVVEG TLQLYHEVDH SDKDHGDETD HSDTDGLDDQ DRDEEDEEED DDIDNYDTKS CSSNLIDEED ESVGYIHLKN GLGNFQLLNT VKPGNPLTSL VSILNLFTHS MSSYGNSNFP SELSSPIDTT VSVNNMFCSS EQNFSNTDSM TNSTNSFPTF PSSMPKLVAR AATDCTIGII PPQSFAKLTA KYPRSASHII QMVLTKLYHV TFQTAHDYLG LTKEIMDIEV LLNKSIVYEL PYYLKEAVIR KFKTVDKSSG SADLEPKPKN SNASSKLKKP PKAKPSDGII QSLKIANANA NTSSNSLSLK PEFTHHPSSR HVVLGSRDQF NPGDLLSNVP LSRTMDILSP NPIHNNNRNK SNGINTSTSN QHKRSSRSSS NNASVHSKKF SSLSPELRNA QLSTSPLSLD NTSVHDHIHP SPVHLKGRVS PRPNLLPTTS FSAAQEETED SALRMALVEA MLTYLGVNKS NMSVSSSSIA NMSSLNSPQL NEMYSRRPSN ASFLMSPHCT PSDISVASSF ASPQTQPTML RILPKEYTIS NKRHNKSKSQ DKKKPRAYKE ELTPNLDFED VKKDFAQGIQ LKFFKKGTTI VEQNARGKGL FYIISGKVNV TTNSSSSVVS SMSKPEQVSA QSSHKGENPH HTQHLLYSVG SGGIVGYLSS LIGYKSFVNI VAKSDVYVGF LSSATLERLF DKYFLIYLRI SDSLTKLLSS RLLKLDHALE WVHLRASETL FSQGDSANGI YVVLNGRLRQ LQQQSLSNSN TSSEEVETQN IILGELAQGE SFGEVEVLTA MNRYSTIVAV RDSELARIPR TLFELLALEH PSIMIRVSRL VAKKIVGDRT VPALTGDPLS IKENDFTSLI PPTKASYSSS LSHKPQNITS GTITFRTITI LPITSGLPVE AFAMKLVQAF KQVGRTTIGL NQRTTLTHLG RHAFDRLSKL KQSGYFAELE EMYQTVVYIS DTPVKSNWTR TCIAQGDCIL LLADARSPSA EIGEYEKLLL NSKTTARTEL ILLHPERYVE PGLTHKWLRY RPWVHSHHHI QFSLTGTTLM NEGKMHVLNN GALALMDKLI QTEFSRKTQQ NISKLLPDSI KNTVENFSSR FMKSKRQYYT PVHRHKNDFL RLARILSGQA IGLVLGGGGA RGISHLGVIQ AIEEQGIPVD VIGGTSIGSF VGGLYAKDYD LVPIYGRVKK FAGRISSIWR MLTDLTWPVT SYTTGHEFNR GIWKTFGDTR IEDFWIQYYC NSTNITDSVQ EIHSFGYAWR YIRASMSLAG LLPPLEENGS MLLDGGYVDN LPVTEMRARG CQTIFAVDVG SADDRTPMEY GDSLNGFWII FNRWNPFSSH PNIPNMAEIQ VRLGYVASVN ALEKAKNTPG VVYVRPPIEE YATLDFSKFE EIYHVGVDYG RIFLQGLIDD DKMPYIPGSQ ETTLNSQVPE FLLHRRNSI //