##gff-version 3
Q04887	UniProtKB	Chain	1	507	.	.	.	ID=PRO_0000048741;Note=Transcription factor SOX-9	
Q04887	UniProtKB	DNA binding	105	173	.	.	.	Note=HMG box;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00267	
Q04887	UniProtKB	Region	1	67	.	.	.	Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite	
Q04887	UniProtKB	Region	63	103	.	.	.	Note=Dimerization (DIM);Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P48436	
Q04887	UniProtKB	Region	63	103	.	.	.	Note=PQA;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P48436	
Q04887	UniProtKB	Region	160	271	.	.	.	Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite	
Q04887	UniProtKB	Region	224	307	.	.	.	Note=Transactivation domain (TAM);Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P48436	
Q04887	UniProtKB	Region	335	429	.	.	.	Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite	
Q04887	UniProtKB	Region	392	507	.	.	.	Note=Transactivation domain (TAC);Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P48436	
Q04887	UniProtKB	Region	477	507	.	.	.	Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite	
Q04887	UniProtKB	Motif	275	284	.	.	.	Note=9aaTAD 1;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P48436	
Q04887	UniProtKB	Motif	290	298	.	.	.	Note=9aaTAD 2;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P48436	
Q04887	UniProtKB	Motif	458	466	.	.	.	Note=9aaTAD 3;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P48436	
Q04887	UniProtKB	Compositional bias	18	52	.	.	.	Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite	
Q04887	UniProtKB	Compositional bias	160	187	.	.	.	Note=Basic and acidic residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite	
Q04887	UniProtKB	Compositional bias	188	233	.	.	.	Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite	
Q04887	UniProtKB	Compositional bias	339	367	.	.	.	Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite	
Q04887	UniProtKB	Compositional bias	368	429	.	.	.	Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite	
Q04887	UniProtKB	Compositional bias	482	507	.	.	.	Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite	
Q04887	UniProtKB	Modified residue	64	64	.	.	.	Note=Phosphoserine%3B by PKA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:10805756;Dbxref=PMID:10805756	
Q04887	UniProtKB	Modified residue	211	211	.	.	.	Note=Phosphoserine%3B by PKA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:10805756;Dbxref=PMID:10805756	
Q04887	UniProtKB	Cross-link	396	396	.	.	.	Note=Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin);Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:15694126;Dbxref=PMID:15694126	
Q04887	UniProtKB	Mutagenesis	64	64	.	.	.	Note=Abolished phosphorylation by PKA%2C leading to deacreased ability to activate transcription of target genes%3B does not affect subcellular localization%3B when associated with A-211. S->A;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:10805756,ECO:0000269|PubMed:11120880;Dbxref=PMID:10805756,PMID:11120880	
Q04887	UniProtKB	Mutagenesis	211	211	.	.	.	Note=Abolished phosphorylation by PKA%2C leading to deacreased ability to activate transcription of target genes%3B does not affect subcellular localization%3B when associated with A-64. S->A;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:10805756,ECO:0000269|PubMed:11120880;Dbxref=PMID:10805756,PMID:11120880	
Q04887	UniProtKB	Mutagenesis	396	396	.	.	.	Note=Increased stability. K->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:15694126;Dbxref=PMID:15694126	
Q04887	UniProtKB	Sequence conflict	62	62	.	.	.	Note=K->R;Ontology_term=ECO:0000305;evidence=ECO:0000305	
Q04887	UniProtKB	Helix	111	126	.	.	.	Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:4S2Q	
Q04887	UniProtKB	Helix	132	144	.	.	.	Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:4S2Q	
Q04887	UniProtKB	Helix	148	168	.	.	.	Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:4S2Q