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Q04734

- PALI_YEAST

UniProt

Q04734 - PALI_YEAST

Protein

pH-response regulator protein palI/RIM9

Gene

RIM9

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 93 (01 Oct 2014)
      Sequence version 1 (01 Nov 1997)
      Previous versions | rss
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    Functioni

    Required for the proteolytic cleavage of the transcriptional repressor RIM101 in response to alkaline ambient pH, which is necessary for sporulation and invasive growth.1 Publication

    GO - Biological processi

    1. ascospore formation Source: SGD

    Enzyme and pathway databases

    BioCyciYEAST:G3O-32765-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    pH-response regulator protein palI/RIM9
    Alternative name(s):
    Regulator of IME2 protein 9
    Gene namesi
    Name:RIM9
    Ordered Locus Names:YMR063W
    ORF Names:YM9916.02
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome XIII

    Organism-specific databases

    CYGDiYMR063w.
    SGDiS000004667. RIM9.

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW
    2. plasma membrane Source: SGD

    Keywords - Cellular componenti

    Cell membrane, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 239239pH-response regulator protein palI/RIM9PRO_0000058216Add
    BLAST

    Expressioni

    Gene expression databases

    GenevestigatoriQ04734.

    Interactioni

    Protein-protein interaction databases

    BioGridi35238. 123 interactions.
    DIPiDIP-4447N.
    IntActiQ04734. 1 interaction.
    MINTiMINT-496242.
    STRINGi4932.YMR063W.

    Structurei

    3D structure databases

    ProteinModelPortaliQ04734.
    ModBaseiSearch...
    MobiDBiSearch...

    Topological domain

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Topological domaini1 – 33CytoplasmicSequence Analysis
    Topological domaini25 – 9066ExtracellularSequence AnalysisAdd
    BLAST
    Topological domaini112 – 12817CytoplasmicSequence AnalysisAdd
    BLAST
    Topological domaini150 – 1556ExtracellularSequence Analysis
    Topological domaini177 – 23963CytoplasmicSequence AnalysisAdd
    BLAST

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei4 – 2421HelicalSequence AnalysisAdd
    BLAST
    Transmembranei91 – 11121HelicalSequence AnalysisAdd
    BLAST
    Transmembranei129 – 14921HelicalSequence AnalysisAdd
    BLAST
    Transmembranei156 – 17621HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the palI/RIM9 family.Curated

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiNOG12793.
    HOGENOMiHOG000115433.
    OMAiQSIAHAC.
    OrthoDBiEOG7QVMDM.

    Family and domain databases

    InterProiIPR009571. SUR7/PalI.
    [Graphical view]
    PfamiPF06687. SUR7. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q04734-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVSMIHIVVF LLAITTMFEI LPLITVPVTK YLSLSSFRNH YYGLFGWCVR    50
    GQNQELMCTK MKIGYDSTDV DSSGHVLTLP SNSKVVVSNL LVVHPISLAF 100
    TGTLLILAVI IMVTPLGDSP EMLLFTALFS LPTFMLCLLC FLVDILLFIS 150
    KLDWPGWLML AATISVALCC SMLWVMRRVV SVKKYESQQS IAHACSMEQY 200
    SISDIYQSKQ NGNSSEYEVA PTHTDSLIAP EVTYRGFIE 239
    Length:239
    Mass (Da):26,697
    Last modified:November 1, 1997 - v1
    Checksum:i8310BF42D5A27E10
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U86641 Genomic DNA. Translation: AAC49630.1.
    Z48952 Genomic DNA. Translation: CAA88788.1.
    M80615 Unassigned DNA. No translation available.
    BK006946 Genomic DNA. Translation: DAA09961.1.
    PIRiS52823.
    RefSeqiNP_013779.1. NM_001182561.1.

    Genome annotation databases

    EnsemblFungiiYMR063W; YMR063W; YMR063W.
    GeneIDi855085.
    KEGGisce:YMR063W.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U86641 Genomic DNA. Translation: AAC49630.1 .
    Z48952 Genomic DNA. Translation: CAA88788.1 .
    M80615 Unassigned DNA. No translation available.
    BK006946 Genomic DNA. Translation: DAA09961.1 .
    PIRi S52823.
    RefSeqi NP_013779.1. NM_001182561.1.

    3D structure databases

    ProteinModelPortali Q04734.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 35238. 123 interactions.
    DIPi DIP-4447N.
    IntActi Q04734. 1 interaction.
    MINTi MINT-496242.
    STRINGi 4932.YMR063W.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii YMR063W ; YMR063W ; YMR063W .
    GeneIDi 855085.
    KEGGi sce:YMR063W.

    Organism-specific databases

    CYGDi YMR063w.
    SGDi S000004667. RIM9.

    Phylogenomic databases

    eggNOGi NOG12793.
    HOGENOMi HOG000115433.
    OMAi QSIAHAC.
    OrthoDBi EOG7QVMDM.

    Enzyme and pathway databases

    BioCyci YEAST:G3O-32765-MONOMER.

    Miscellaneous databases

    NextBioi 978378.

    Gene expression databases

    Genevestigatori Q04734.

    Family and domain databases

    InterProi IPR009571. SUR7/PalI.
    [Graphical view ]
    Pfami PF06687. SUR7. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Proteolytic activation of Rim1p, a positive regulator of yeast sporulation and invasive growth."
      Li W., Mitchell A.P.
      Genetics 145:63-73(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    3. Cited for: GENOME REANNOTATION.
      Strain: ATCC 204508 / S288c.
    4. "Characterization of a second nuclear gene, AEP1, required for expression of the mitochondrial OLI1 gene in Saccharomyces cerevisiae."
      Payne M.J., Lukins H.B.
      Curr. Genet. 24:126-135(1993) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 70-239.
    5. "A global topology map of the Saccharomyces cerevisiae membrane proteome."
      Kim H., Melen K., Oesterberg M., von Heijne G.
      Proc. Natl. Acad. Sci. U.S.A. 103:11142-11147(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
      Strain: ATCC 208353 / W303-1A.

    Entry informationi

    Entry nameiPALI_YEAST
    AccessioniPrimary (citable) accession number: Q04734
    Secondary accession number(s): D6VZN7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 93 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families
    2. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    3. Yeast chromosome XIII
      Yeast (Saccharomyces cerevisiae) chromosome XIII: entries and gene names

    External Data

    Dasty 3