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Q04734

- PALI_YEAST

UniProt

Q04734 - PALI_YEAST

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Protein

pH-response regulator protein palI/RIM9

Gene

RIM9

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

Required for the proteolytic cleavage of the transcriptional repressor RIM101 in response to alkaline ambient pH, which is necessary for sporulation and invasive growth.1 Publication

GO - Biological processi

  1. ascospore formation Source: SGD
Complete GO annotation...

Enzyme and pathway databases

BioCyciYEAST:G3O-32765-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
pH-response regulator protein palI/RIM9
Alternative name(s):
Regulator of IME2 protein 9
Gene namesi
Name:RIM9
Ordered Locus Names:YMR063W
ORF Names:YM9916.02
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome XIII

Organism-specific databases

CYGDiYMR063w.
SGDiS000004667. RIM9.

Subcellular locationi

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 239239pH-response regulator protein palI/RIM9PRO_0000058216Add
BLAST

Expressioni

Gene expression databases

GenevestigatoriQ04734.

Interactioni

Protein-protein interaction databases

BioGridi35238. 123 interactions.
DIPiDIP-4447N.
IntActiQ04734. 1 interaction.
MINTiMINT-496242.
STRINGi4932.YMR063W.

Structurei

3D structure databases

ProteinModelPortaliQ04734.
ModBaseiSearch...
MobiDBiSearch...

Topological domain

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 33CytoplasmicSequence Analysis
Topological domaini25 – 9066ExtracellularSequence AnalysisAdd
BLAST
Topological domaini112 – 12817CytoplasmicSequence AnalysisAdd
BLAST
Topological domaini150 – 1556ExtracellularSequence Analysis
Topological domaini177 – 23963CytoplasmicSequence AnalysisAdd
BLAST

Transmembrane

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei4 – 2421HelicalSequence AnalysisAdd
BLAST
Transmembranei91 – 11121HelicalSequence AnalysisAdd
BLAST
Transmembranei129 – 14921HelicalSequence AnalysisAdd
BLAST
Transmembranei156 – 17621HelicalSequence AnalysisAdd
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the palI/RIM9 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG12793.
HOGENOMiHOG000115433.
InParanoidiQ04734.
OMAiQSIAHAC.
OrthoDBiEOG7QVMDM.

Family and domain databases

InterProiIPR009571. SUR7/PalI.
[Graphical view]
PfamiPF06687. SUR7. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q04734-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MVSMIHIVVF LLAITTMFEI LPLITVPVTK YLSLSSFRNH YYGLFGWCVR
60 70 80 90 100
GQNQELMCTK MKIGYDSTDV DSSGHVLTLP SNSKVVVSNL LVVHPISLAF
110 120 130 140 150
TGTLLILAVI IMVTPLGDSP EMLLFTALFS LPTFMLCLLC FLVDILLFIS
160 170 180 190 200
KLDWPGWLML AATISVALCC SMLWVMRRVV SVKKYESQQS IAHACSMEQY
210 220 230
SISDIYQSKQ NGNSSEYEVA PTHTDSLIAP EVTYRGFIE
Length:239
Mass (Da):26,697
Last modified:November 1, 1997 - v1
Checksum:i8310BF42D5A27E10
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U86641 Genomic DNA. Translation: AAC49630.1.
Z48952 Genomic DNA. Translation: CAA88788.1.
M80615 Unassigned DNA. No translation available.
BK006946 Genomic DNA. Translation: DAA09961.1.
PIRiS52823.
RefSeqiNP_013779.1. NM_001182561.1.

Genome annotation databases

EnsemblFungiiYMR063W; YMR063W; YMR063W.
GeneIDi855085.
KEGGisce:YMR063W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U86641 Genomic DNA. Translation: AAC49630.1 .
Z48952 Genomic DNA. Translation: CAA88788.1 .
M80615 Unassigned DNA. No translation available.
BK006946 Genomic DNA. Translation: DAA09961.1 .
PIRi S52823.
RefSeqi NP_013779.1. NM_001182561.1.

3D structure databases

ProteinModelPortali Q04734.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 35238. 123 interactions.
DIPi DIP-4447N.
IntActi Q04734. 1 interaction.
MINTi MINT-496242.
STRINGi 4932.YMR063W.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YMR063W ; YMR063W ; YMR063W .
GeneIDi 855085.
KEGGi sce:YMR063W.

Organism-specific databases

CYGDi YMR063w.
SGDi S000004667. RIM9.

Phylogenomic databases

eggNOGi NOG12793.
HOGENOMi HOG000115433.
InParanoidi Q04734.
OMAi QSIAHAC.
OrthoDBi EOG7QVMDM.

Enzyme and pathway databases

BioCyci YEAST:G3O-32765-MONOMER.

Miscellaneous databases

NextBioi 978378.

Gene expression databases

Genevestigatori Q04734.

Family and domain databases

InterProi IPR009571. SUR7/PalI.
[Graphical view ]
Pfami PF06687. SUR7. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Proteolytic activation of Rim1p, a positive regulator of yeast sporulation and invasive growth."
    Li W., Mitchell A.P.
    Genetics 145:63-73(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  3. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  4. "Characterization of a second nuclear gene, AEP1, required for expression of the mitochondrial OLI1 gene in Saccharomyces cerevisiae."
    Payne M.J., Lukins H.B.
    Curr. Genet. 24:126-135(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 70-239.
  5. "A global topology map of the Saccharomyces cerevisiae membrane proteome."
    Kim H., Melen K., Oesterberg M., von Heijne G.
    Proc. Natl. Acad. Sci. U.S.A. 103:11142-11147(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: ATCC 208353 / W303-1A.

Entry informationi

Entry nameiPALI_YEAST
AccessioniPrimary (citable) accession number: Q04734
Secondary accession number(s): D6VZN7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: October 29, 2014
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  3. Yeast chromosome XIII
    Yeast (Saccharomyces cerevisiae) chromosome XIII: entries and gene names

External Data

Dasty 3