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Protein

54S ribosomal protein L34, mitochondrial

Gene

YDR115W

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciYEAST:G3O-29715-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
54S ribosomal protein L34, mitochondrial
Short name:
L34mt
Gene namesi
Ordered Locus Names:YDR115W
ORF Names:YD9727.10
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome IV

Organism-specific databases

EuPathDBiFungiDB:YDR115W.
SGDiS000002522. YDR115W.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 1616MitochondrionSequence analysisAdd
BLAST
Chaini17 – 1058954S ribosomal protein L34, mitochondrialPRO_0000030523Add
BLAST

Interactioni

Subunit structurei

Component of the mitochondrial large ribosomal subunit (By similarity). Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 34 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S).By similarity

Protein-protein interaction databases

BioGridi32171. 12 interactions.
DIPiDIP-1824N.
IntActiQ04598. 2 interactions.
MINTiMINT-386975.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3J6Belectron microscopy3.20Y1-105[»]
ProteinModelPortaliQ04598.
SMRiQ04598. Positions 62-104.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L34P family.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

InParanoidiQ04598.
KOiK02914.
OrthoDBiEOG092C5KYC.

Family and domain databases

HAMAPiMF_00391. Ribosomal_L34. 1 hit.
InterProiIPR000271. Ribosomal_L34.
[Graphical view]
PANTHERiPTHR14503. PTHR14503. 1 hit.
PfamiPF00468. Ribosomal_L34. 1 hit.
[Graphical view]
ProDomiPD003101. Ribosomal_L34. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR01030. rpmH_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q04598-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPLFARLCQP QSRRMFSSIS SFSALSVLRP QTGMLLNSSP LKTPSFTPLG
60 70 80 90 100
FGLIGQRRWK SRGNTYQPST LKRKRTFGFL ARAKSKQGSK ILKRRKLKGR

WFLSH
Length:105
Mass (Da):12,030
Last modified:November 1, 1996 - v1
Checksum:i7A1C10A502C97EC5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z48758 Genomic DNA. Translation: CAA88668.1.
AY557661 Genomic DNA. Translation: AAS55987.1.
BK006938 Genomic DNA. Translation: DAA11960.1.
PIRiS52680.
RefSeqiNP_010400.1. NM_001180423.1.

Genome annotation databases

EnsemblFungiiYDR115W; YDR115W; YDR115W.
GeneIDi851692.
KEGGisce:YDR115W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z48758 Genomic DNA. Translation: CAA88668.1.
AY557661 Genomic DNA. Translation: AAS55987.1.
BK006938 Genomic DNA. Translation: DAA11960.1.
PIRiS52680.
RefSeqiNP_010400.1. NM_001180423.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3J6Belectron microscopy3.20Y1-105[»]
ProteinModelPortaliQ04598.
SMRiQ04598. Positions 62-104.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi32171. 12 interactions.
DIPiDIP-1824N.
IntActiQ04598. 2 interactions.
MINTiMINT-386975.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYDR115W; YDR115W; YDR115W.
GeneIDi851692.
KEGGisce:YDR115W.

Organism-specific databases

EuPathDBiFungiDB:YDR115W.
SGDiS000002522. YDR115W.

Phylogenomic databases

InParanoidiQ04598.
KOiK02914.
OrthoDBiEOG092C5KYC.

Enzyme and pathway databases

BioCyciYEAST:G3O-29715-MONOMER.

Miscellaneous databases

PROiQ04598.

Family and domain databases

HAMAPiMF_00391. Ribosomal_L34. 1 hit.
InterProiIPR000271. Ribosomal_L34.
[Graphical view]
PANTHERiPTHR14503. PTHR14503. 1 hit.
PfamiPF00468. Ribosomal_L34. 1 hit.
[Graphical view]
ProDomiPD003101. Ribosomal_L34. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR01030. rpmH_bact. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRM34_YEAST
AccessioniPrimary (citable) accession number: Q04598
Secondary accession number(s): D6VSA0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 31, 2002
Last sequence update: November 1, 1996
Last modified: September 7, 2016
This is version 124 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 200 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
  4. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  5. Yeast chromosome IV
    Yeast (Saccharomyces cerevisiae) chromosome IV: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.