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Protein

Capsid protein

Gene

ORF5

Organism
Shallot virus X (ShVX)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Required for genome encapsidation. Forms ribonucleoprotein complexes along with TGB1 helicase and viral RNA.

GO - Molecular functioni

Keywordsi

Molecular functionRibonucleoprotein

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Short name:
CP
Alternative name(s):
Coat protein
Gene namesi
ORF Names:ORF5
OrganismiShallot virus X (ShVX)
Taxonomic identifieri31770 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageTymoviralesAlphaflexiviridaeAllexivirus
Virus hostiAllium cepa var. aggregatum (Shallot) (Allium ascalonicum) [TaxID: 28911]
Proteomesi
  • UP000001663 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002226431 – 262Capsid proteinAdd BLAST262

Family & Domainsi

Sequence similaritiesi

Belongs to the potexvirus capsid protein family.Curated

Phylogenomic databases

OrthoDBiVOG090000QE.

Family and domain databases

InterProiView protein in InterPro
IPR000052. Pltvir_coat.
PfamiView protein in Pfam
PF00286. Flexi_CP. 1 hit.
PRINTSiPR00232. POTXCARLCOAT.
PROSITEiView protein in PROSITE
PS00418. POTEX_CARLAVIRUS_COAT. 1 hit.

Sequencei

Sequence statusi: Complete.

Q04572-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNEEDLNRLN ASGDLNGANN QRIPAGPSGV NQPIPSVTAG GQNQFRPSGG
60 70 80 90 100
LGNQGSRPTE SSNQDELLPT EAEIEAITSD VESNSVAPKA TIREILDTLQ
110 120 130 140 150
AKRQNATPKD LFSLAWACYH NGSSRFVNLN TDAPCGITHA DLKTLWKASA
160 170 180 190 200
TLRQFCSYYA KSCYVSGKQQ KKPPANWSRK GYPEEAKFAG FDFFNAVLSE
210 220 230 240 250
SSPAPPGGMR FKPTQAEILG HSMNAKMSIV ESRQSSHMVS TRADLLGRQQ
260
INEQPKPPMI TF
Length:262
Mass (Da):28,487
Last modified:June 1, 1994 - v1
Checksum:i31D1ACD37EF303F3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M97264 Genomic RNA. Translation: AAA47791.1.
PIRiJQ1738.
RefSeqiNP_620652.1. NC_003795.1.

Genome annotation databases

GeneIDi944369.
KEGGivg:944369.

Similar proteinsi

Entry informationi

Entry nameiCAPSD_SHVX
AccessioniPrimary (citable) accession number: Q04572
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: June 1, 1994
Last modified: March 15, 2017
This is version 72 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families