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Reviewed, UniProtKB/Swiss-Prot Q04336 (YM54_YEAST)

Last modified November 25, 2008. Version 51. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Uncharacterized protein YMR196W
Gene names
Ordered Locus Names: YMR196W
ORF Names: YM9646.09
OrganismSaccharomyces cerevisiae (Baker's yeast) [Complete proteome]
Taxonomic identifier4932 [NCBI]
Taxonomic lineageEukaryota › Fungi › Dikarya › Ascomycota › Saccharomycotina › Saccharomycetes › Saccharomycetales › Saccharomycetaceae › Saccharomyces

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Protein attributes

Sequence length1088 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

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General annotation (Comments)

Miscellaneous

Present with 2220 molecules/cell in log phase SD medium.

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Ontologies

Keywords

   PTMPhosphoprotein
   Technical termComplete proteome

Gene Ontology (GO)

   Cellular componentcytoplasm

Inferred from direct assay. Source: SGD

   Molecular functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

protein binding

Inferred from physical interaction. Source: IntAct

Complete GO annotation...

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Binary interactions

With

Entry

#Exp.

IntAct

Notes

AUS1Q084091EBI-27435,EBI-35723
PRP40P332031EBI-27435,EBI-701
RSP5P399401EBI-27435,EBI-16219

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 10881088Uncharacterized protein YMR196W
PRO_0000203326

Amino acid modifications

Modified residue2991Phosphoserine
Modified residue9571Phosphoserine
Modified residue9631Phosphoserine
Modified residue9641Phosphothreonine
Modified residue9661Phosphoserine
Modified residue9841Phosphoserine
Modified residue10081Phosphothreonine
Modified residue10101Phosphoserine
Modified residue10131Phosphothreonine
Modified residue10161Phosphoserine
Modified residue10171Phosphoserine
Modified residue10191Phosphoserine
Modified residue10201Phosphoserine
Modified residue10811Phosphoserine

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Sequences

Sequence LengthMass (Da)Tools
Q04336-1 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 36C2B42BB2749687

FASTA1,088126,624
        10         20         30         40         50         60 
MNKLRDKFVD STVEEERLRE NRNHEKYWYR WGPYLSERSW ATVREDYSLN GDAWSNFPFE 

        70         80         90        100        110        120 
HANARVFRWG EDGLFGVSDN KQLVCMNVAL WNGKDERLKE RLFGLTGPQG NHGEDVKELY 

       130        140        150        160        170        180 
FYLDNTPTHS YMKALYKYPF KKAFPYKELV QKNGERGYED KEFEVYDIDG LYRDSETGDN 

       190        200        210        220        230        240 
PYFDVFFEMA KDDENPSELN FRLTIHNRSK IDSGELYIAP QLFFRNTWAF DGTRTKDKPL 

       250        260        270        280        290        300 
LERDAEAANL INMTHKKYGN CQMVFQPSPG GFSSGTNEEE EDKEVEDIDP LLLFTDNESN 

       310        320        330        340        350        360 
LVKLFNEEKN PSEYTKDAFE EYLVQGKTDA VNPENKGTKA CAVYHFKNIP PGEYVTVRYK 

       370        380        390        400        410        420 
FTNDPKNSIF KAQNLAVVDE DEFDLIFDNR EEEADNFYWR ITPLPISDEL RNLQRQAFSG 

       430        440        450        460        470        480 
LLWTKQFYNF TYDAWYNGDA NVKPRPPPNR ANGRNKNWKH LYIEDILSMP DKWEYPFFAS 

       490        500        510        520        530        540 
WDTAFHCIPL AMIDPEFAKR QLDLLTREWY MHPNGQIPAY EWNFNDVNPP VHAWAVYRVF 

       550        560        570        580        590        600 
KIERNMYNRE DRTFLERVFQ KLLLNFTWWV NRKDTEGKNV FEGGFLGLDN IGVFNRSEPL 

       610        620        630        640        650        660 
PTGGTLEQAD STGWMAFFSL QMLNIALELA KENPVYEDIA SKFFEHFILI SDSMSFEYAT 

       670        680        690        700        710        720 
DITGEKCKEV IKQNLWNEAD KFYYDAISWG DHKVQLPIRS LVGLIPLYAS MTLEPSIIKQ 

       730        740        750        760        770        780 
FRGFKKRVDW FVNNRPEIFD RNIASMSKKG VGERLLLSLV TKERLTAILS RLLDETEFLS 

       790        800        810        820        830        840 
PYGIRSLSKY HEKHPFEMNV NGVEYMVKYL PGESDSGMFG GNSNWRGPIW FPTSFLIMEA 

       850        860        870        880        890        900 
LQRFYLYYGS DFKVECPVGS GDYLNLAEVA EELGYRMIHL FVPDENGERA IHYGDHSKFL 

       910        920        930        940        950        960 
SSDPYFRDYV PFFEYFDGDT GRGLGASHQC GWTALVAKWI SDVGISCVRL PRTPRSSVAT 

       970        980        990       1000       1010       1020 
TASTESSEQG PKMKRMARRK SAKSLVNYTA TILDLTEEEK RHHRIGGTHS GLTPQSSISS 

      1030       1040       1050       1060       1070       1080 
DKARHLMEEM NEEEGIHETV VPEDRHNFET KLIGKLKDKV KNMKVTDKAK DEDIDPMDPM 


SPLNKDVS

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References

[1]"The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII."
Bowman S., Churcher C.M., Badcock K., Brown D., Chillingworth T., Connor R., Dedman K., Devlin K., Gentles S., Hamlin N., Hunt S., Jagels K., Lye G., Moule S., Odell C., Pearson D., Rajandream M.A., Rice P. expand/collapse author list , Skelton J., Walsh S.V., Whitehead S., Barrell B.G.
Nature 387:90-93(1997) [PubMed: 9169872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 204511 / S288c / AB972.
[2]"Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae."
Ficarro S.B., McCleland M.L., Stukenberg P.T., Burke D.J., Ross M.M., Shabanowitz J., Hunt D.F., White F.M.
Nat. Biotechnol. 20:301-305(2002) [PubMed: 11875433] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-1013 AND SER-1020, MASS SPECTROMETRY.
[3]"Global analysis of protein expression in yeast."
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S.
Nature 425:737-741(2003) [PubMed: 14562106] [Abstract]
Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
[4]"Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry."
Chi A., Huttenhower C., Geer L.Y., Coon J.J., Syka J.E.P., Bai D.L., Shabanowitz J., Burke D.J., Troyanskaya O.G., Hunt D.F.
Proc. Natl. Acad. Sci. U.S.A. 104:2193-2198(2007) [PubMed: 17287358] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1010, MASS SPECTROMETRY.
[5]"Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases."
Smolka M.B., Albuquerque C.P., Chen S.H., Zhou H.
Proc. Natl. Acad. Sci. U.S.A. 104:10364-10369(2007) [PubMed: 17563356] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-1008; SER-1010; THR-1013; SER-1016; SER-1017; SER-1019 AND SER-1020, MASS SPECTROMETRY.
[6]"A multidimensional chromatography technology for in-depth phosphoproteome analysis."
Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.
Mol. Cell. Proteomics 7:1389-1396(2008) [PubMed: 18407956] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-299; SER-957; SER-963; THR-964; SER-966; SER-984; SER-1010; THR-1013; SER-1016; SER-1019; SER-1020 AND SER-1081, MASS SPECTROMETRY.
+Additional computationally mapped references.

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Cross-references

Sequence databases

Z47815 Genomic DNA. Translation: CAA87818.1.
PIRS50925.
RefSeqNP_013923.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

DIPDIP:6550N.
IntActQ04336.

Proteomic databases

PeptideAtlasQ04336.

Genome annotation databases

EnsemblYMR196W. Saccharomyces cerevisiae. [Contig view]
GeneID855236.
GenomeReviewsGene locus YMR196W in contig Z71257_GR.
KEGGsce:YMR196W.
NMPDRfig|4932.3.peg.4976.

Organism-specific databases

CYGDYMR196w.
SGDS000004809. YMR196W.
Yeast-GFPSearch...

Phylogenomic databases

HOGENOMQ04336.

Gene expression databases

ArrayExpressQ04336.
GermOnlineYMR196W. Saccharomyces cerevisiae.

Family and domain databases

ProtoNetSearch...

Other Resources

LinkHubQ04336.
NextBio978780.

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Entry information

Entry nameYM54_YEAST
AccessionPrimary (citable) accession number: Q04336
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 25, 2008
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectFPAP (Fungal Proteome Annotation Project)

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Relevant documents

Yeast

Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD

Yeast chromosome XIII

Yeast (Saccharomyces cerevisiae) chromosome XIII: entries and gene names

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents