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Protein
Submitted name:

Pectate lyase

Gene

pel9.5

Organism
Pectobacterium carotovorum (Erwinia carotovora)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationImported

Keywords - Biological processi

Carbohydrate metabolism, Polysaccharide degradationUniRule annotation

Enzyme and pathway databases

BRENDAi4.2.2.2. 2140.

Protein family/group databases

CAZyiPL1. Polysaccharide Lyase Family 1.

Names & Taxonomyi

Protein namesi
Submitted name:
Pectate lyaseImported (EC:4.2.2.2Imported)
Gene namesi
Name:pel9.5Imported
OrganismiPectobacterium carotovorum (Erwinia carotovora)Imported
Taxonomic identifieri554 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium

Subcellular locationi

  • Secreted UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

SecretedUniRule annotation

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence analysisAdd
BLAST
Chaini23 – 353331Sequence analysisPRO_5004164505Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ04086.
SMRiQ04086. Positions 22-352.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini49 – 283235Amb_allInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the polysaccharide lyase 1 family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR002022. Amb_allergen_dom.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00544. Pec_lyase_C. 1 hit.
[Graphical view]
SMARTiSM00656. Amb_all. 1 hit.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.

Sequencei

Sequence statusi: Complete.

Q04086-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKYLLPSAAA GLLLLAAQPT MAANTGGYAT TDGGDVSGAV KKTARSLQEI
60 70 80 90 100
VDIIEAAKKD SSGKAVKGGP YPLVITYNGN EDALIKAAEA NICGQWSKDP
110 120 130 140 150
RGVEIKEFTK GITILGTNGS SANFGIWMVN SSNVIVRNMR FGYMPGGAKD
160 170 180 190 200
GDAIRIDNSP NVWIDHNEIF AKNFECAGTP DNDTTFESAV DIKKASTNVT
210 220 230 240 250
VSYNYIHGVK KVGLSGSSNT DTGRNLTYHH NIYSDVNSRL PLQRGGQVHA
260 270 280 290 300
YNNLYDGINS SGFNVRQKGI ALIIRNMHNA LNPVATRDGD ANFGTWDLRN
310 320 330 340 350
NNITSPADFA KYNITWDKAT TPYINAEDWK STGTFSAVPS SYSPFSAQCK

DKW
Length:353
Mass (Da):38,112
Last modified:November 1, 1996 - v1
Checksum:i8612C179E9FF31CD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X61088 Genomic DNA. Translation: CAA43402.1.
PIRiS15717.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X61088 Genomic DNA. Translation: CAA43402.1.
PIRiS15717.

3D structure databases

ProteinModelPortaliQ04086.
SMRiQ04086. Positions 22-352.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiPL1. Polysaccharide Lyase Family 1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Enzyme and pathway databases

BRENDAi4.2.2.2. 2140.

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR002022. Amb_allergen_dom.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00544. Pec_lyase_C. 1 hit.
[Graphical view]
SMARTiSM00656. Amb_all. 1 hit.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ04086_PECCA
AccessioniPrimary (citable) accession number: Q04086
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: December 9, 2015
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.