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Protein

Probable D-serine dehydratase

Gene

dsdA

Organism
Pediococcus pentosaceus (strain ATCC 25745 / 183-1w)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

D-serine = pyruvate + NH3.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Ligandi

Pyridoxal phosphate

Enzyme and pathway databases

BioCyciPPEN278197:GI4Y-1745-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable D-serine dehydrataseUniRule annotation (EC:4.3.1.18UniRule annotation)
Alternative name(s):
D-serine deaminaseUniRule annotation
Short name:
DSDUniRule annotation
Gene namesi
Name:dsdAUniRule annotation
Ordered Locus Names:PEPE_1745
OrganismiPediococcus pentosaceus (strain ATCC 25745 / 183-1w)
Taxonomic identifieri278197 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesLactobacillaceaePediococcus
Proteomesi
  • UP000000773 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 432432Probable D-serine dehydratasePRO_0000291735Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei112 – 1121N6-(pyridoxal phosphate)lysineUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi278197.PEPE_1745.

Family & Domainsi

Sequence similaritiesi

Belongs to the serine/threonine dehydratase family. DsdA subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105BZC. Bacteria.
COG3048. LUCA.
HOGENOMiHOG000218072.
KOiK01753.
OMAiHCLFAEP.
OrthoDBiEOG6HXJ23.

Family and domain databases

HAMAPiMF_01030. D_Ser_dehydrat.
InterProiIPR011780. D_Ser_am_lyase.
IPR000634. Ser/Thr_deHydtase_PyrdxlP-BS.
IPR001926. TrpB-like_PLP-dep.
[Graphical view]
PANTHERiPTHR10314:SF9. PTHR10314:SF9. 2 hits.
PfamiPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMiSSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR02035. D_Ser_am_lyase. 1 hit.
PROSITEiPS00165. DEHYDRATASE_SER_THR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q03DF6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIDVDALSKK YPAIKQMQAY EPIFWKNLNY KKEAELPVGV EHIFDAEARF
60 70 80 90 100
QRFAPYFEVA FPETLPTHGI LESPLLKMDK MKAVLNAEAQ NQVKGDLYLK
110 120 130 140 150
ADNYLPISGS IKSRGGIYEV LKFAEKVAMK HGEIVYGDNY AKLNEPRFKD
160 170 180 190 200
LFGQYGIVVG STGNLGLSIG IVACKLGFRT SVHMSSDAAQ WKKDMLREKG
210 220 230 240 250
VNVVEYNDNF THAITEARKS AEADPMAYFI DDEGSYDLFL GYSVAAVRLQ
260 270 280 290 300
AQLKAQNIKV DAEHPLFVYL PAGVGGSPSG VAFGLKKIIG ENVHPIFAEP
310 320 330 340 350
THIPSVSLGM MTGLNDQISV YDAGIDGVTK ADGLAVGRPS RIAGKMMDTL
360 370 380 390 400
LYGIQTFDDQ KMMKNVAELH DSENVDVEPS AASGFTILDD VQAQLEQDYP
410 420 430
MENASHIVWA TGGSMVPKND MDQYVAEGHQ VK
Length:432
Mass (Da):47,549
Last modified:November 14, 2006 - v1
Checksum:i7A8FACDFC887413F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000422 Genomic DNA. Translation: ABJ68766.1.
RefSeqiWP_011673850.1. NC_008525.1.

Genome annotation databases

EnsemblBacteriaiABJ68766; ABJ68766; PEPE_1745.
KEGGippe:PEPE_1745.
PATRICi22876796. VBIPedPen34213_1650.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000422 Genomic DNA. Translation: ABJ68766.1.
RefSeqiWP_011673850.1. NC_008525.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi278197.PEPE_1745.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABJ68766; ABJ68766; PEPE_1745.
KEGGippe:PEPE_1745.
PATRICi22876796. VBIPedPen34213_1650.

Phylogenomic databases

eggNOGiENOG4105BZC. Bacteria.
COG3048. LUCA.
HOGENOMiHOG000218072.
KOiK01753.
OMAiHCLFAEP.
OrthoDBiEOG6HXJ23.

Enzyme and pathway databases

BioCyciPPEN278197:GI4Y-1745-MONOMER.

Family and domain databases

HAMAPiMF_01030. D_Ser_dehydrat.
InterProiIPR011780. D_Ser_am_lyase.
IPR000634. Ser/Thr_deHydtase_PyrdxlP-BS.
IPR001926. TrpB-like_PLP-dep.
[Graphical view]
PANTHERiPTHR10314:SF9. PTHR10314:SF9. 2 hits.
PfamiPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMiSSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR02035. D_Ser_am_lyase. 1 hit.
PROSITEiPS00165. DEHYDRATASE_SER_THR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25745 / 183-1w.

Entry informationi

Entry nameiSDHD_PEDPA
AccessioniPrimary (citable) accession number: Q03DF6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 26, 2007
Last sequence update: November 14, 2006
Last modified: November 11, 2015
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.