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Reviewed, UniProtKB/Swiss-Prot Q03687 (YMP0_YEAST)

Last modified November 24, 2009. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Uncharacterized membrane protein YMR010W
Gene names
Ordered Locus Names: YMR010W
ORF Names: YM8270.13
OrganismSaccharomyces cerevisiae (Baker's yeast) [Complete proteome]
Taxonomic identifier4932 [NCBI]
Taxonomic lineageEukaryota › Fungi › Dikarya › Ascomycota › Saccharomycotina › Saccharomycetes › Saccharomycetales › Saccharomycetaceae › Saccharomyces

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Protein attributes

Sequence length405 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

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General annotation (Comments)

Subcellular location

Membrane; Multi-pass membrane protein.

Miscellaneous

Present with 937 molecules/cell in log phase SD medium. Ref.3

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Ontologies

Keywords
   Cellular componentMembrane
   DomainTransmembrane
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular componentcytoplasm

Inferred from direct assay. Source: SGD

integral to membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionidentical protein binding

Inferred from physical interaction. Source: IntAct

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 405405Uncharacterized membrane protein YMR010W
PRO_0000203270

Regions

Topological domain1 – 5151Extracellular Potential
Transmembrane52 – 7221 Potential
Topological domain73 – 764Cytoplasmic Potential
Transmembrane77 – 9721 Potential
Topological domain98 – 1036Extracellular Potential
Transmembrane104 – 12421 Potential
Topological domain125 – 17854Cytoplasmic Potential
Transmembrane179 – 19921 Potential
Topological domain200 – 22324Extracellular Potential
Transmembrane224 – 24421 Potential
Topological domain245 – 25410Cytoplasmic Potential
Transmembrane255 – 27521 Potential
Topological domain276 – 29924Extracellular Potential
Transmembrane300 – 32021 Potential
Topological domain321 – 40585Cytoplasmic Potential

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Sequences

Sequence LengthMass (Da)Tools
Q03687-1 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: AF019859073E134E

FASTA40546,872
        10         20         30         40         50         60 
MSTTGPLDAT LIRDVAVATA TKASYDMSDT LYSYLPKVDQ FYIPEWLTMQ FIANNLISFT 

        70         80         90        100        110        120 
PLFSYGTTII SIEKCKTALG FSIDICATML IASILRISYY LITPYEITLL RQSLVMIFIQ 

       130        140        150        160        170        180 
LILLRTSLKY RPDEYKYQNL TDVESLSHLI HDIWFEFFSC INRPKFLSED WKNLIKSLSF 

       190        200        210        220        230        240 
TNLLKFSFKI FLAFFYKILK FFDPNFKRIG AFWQWDDDKN FWRFLALFAT VQILVTFFIS 

       250        260        270        280        290        300 
NILNWDSLAQ GLGSIIGSLG LLVESLLPLP QIAILYKLKS VQGFKLILLV SWLCGDTLKI 

       310        320        330        340        350        360 
TYLIFGAKNI SALFVIFALF QMSLDFYIGG QYIYYRYYYP KLRHQHHPND SNSPSDEDES 

       370        380        390        400 
EMYELDLFNT LQKDVEKALK QDSNDTSDSP QDDQVGKSQA QAVTL

« Hide

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References

« Hide 'large scale' references
[1]"The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII."
Bowman S., Churcher C.M., Badcock K., Brown D., Chillingworth T., Connor R., Dedman K., Devlin K., Gentles S., Hamlin N., Hunt S., Jagels K., Lye G., Moule S., Odell C., Pearson D., Rajandream M.A., Rice P. expand/collapse author list , Skelton J., Walsh S.V., Whitehead S., Barrell B.G.
Nature 387:90-93(1997) [PubMed: 9169872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 204511 / S288c / AB972.
[2]"Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae."
Hu Y., Rolfs A., Bhullar B., Murthy T.V.S., Zhu C., Berger M.F., Camargo A.A., Kelley F., McCarron S., Jepson D., Richardson A., Raphael J., Moreira D., Taycher E., Zuo D., Mohr S., Kane M.F., Williamson J. expand/collapse author list , Simpson A.J.G., Bulyk M.L., Harlow E., Marsischky G., Kolodner R.D., LaBaer J.
Genome Res. 17:536-543(2007) [PubMed: 17322287] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: ATCC 204508 / S288c.
[3]"Global analysis of protein expression in yeast."
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S.
Nature 425:737-741(2003) [PubMed: 14562106] [Abstract]
Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
[4]"A global topology map of the Saccharomyces cerevisiae membrane proteome."
Kim H., Melen K., Oesterberg M., von Heijne G.
Proc. Natl. Acad. Sci. U.S.A. 103:11142-11147(2006) [PubMed: 16847258] [Abstract]
Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
+Additional computationally mapped references.

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Cross-references

Sequence databases

Z48613 Genomic DNA. Translation: CAA88526.1.
AY558117 Genomic DNA. Translation: AAS56443.1.
PIRS53040.
RefSeqNP_013723.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

DIPDIP:4512N.
IntActQ03687. 40 interactions.
STRINGQ03687.

Genome annotation databases

EnsemblYMR010W; YMR010W; YMR010W; Saccharomyces cerevisiae. [Genome view]
GeneID855022.
KEGGsce:YMR010W.
NMPDRfig|4932.3.peg.4767.

Organism-specific databases

CYGDYMR010w.
SGDS000004612. YMR010W.

Phylogenomic databases

HOGENOMQ03687.
OMAPLFSYGT
OrthoDBEOG9BGBCC

Gene expression databases

ArrayExpressQ03687.
GenevestigatorQ03687.
GermOnlineYMR010W. Saccharomyces cerevisiae.

Family and domain databases

ProtoNetSearch...

Other Resources

NextBio978210.

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Entry information

Entry nameYMP0_YEAST
AccessionPrimary (citable) accession number: Q03687
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 24, 2009
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectFPAP (Fungal Proteome Annotation Project)

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Relevant documents

Yeast

Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD

Yeast chromosome XIII

Yeast (Saccharomyces cerevisiae) chromosome XIII: entries and gene names

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents