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Q03674

- PLB2_YEAST

UniProt

Q03674 - PLB2_YEAST

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Protein
Lysophospholipase 2
Gene
PLB2, YMR006C, YM8270.08C
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Sequentially removes both fatty acyl groups from diacylglycerophospholipids and therefore has both phospholipase A and lysophospholipase activities. Substrate preference is phosphatidylserine > phosphatidylinositol > phosphatidylcholine > phosphatidylethanolamine.1 Publication

Catalytic activityi

2-lysophosphatidylcholine + H2O = glycerophosphocholine + a carboxylate.

GO - Molecular functioni

  1. lysophospholipase activity Source: SGD

GO - Biological processi

  1. glycerophospholipid metabolic process Source: SGD
  2. phospholipid catabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

Lipid degradation, Lipid metabolism

Enzyme and pathway databases

BioCyciMetaCyc:YMR006C-MONOMER.
YEAST:YMR006C-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Lysophospholipase 2 (EC:3.1.1.5)
Alternative name(s):
Phospholipase B 2
Gene namesi
Name:PLB2
Ordered Locus Names:YMR006C
ORF Names:YM8270.08C
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome XIII

Organism-specific databases

CYGDiYMR006c.
SGDiS000004608. PLB2.

Subcellular locationi

Secretedcell wall. Membrane; Lipid-anchorGPI-anchor
Note: Covalently-linked GPI-modified cell wall protein (GPI-CWP).2 Publications

GO - Cellular componenti

  1. anchored component of membrane Source: UniProtKB-KW
  2. extracellular region Source: SGD
  3. fungal-type cell wall Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Cell wall, Membrane, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919 Reviewed prediction
Add
BLAST
Chaini20 – 680661Lysophospholipase 2
PRO_0000024647Add
BLAST
Propeptidei681 – 70626Removed in mature form Reviewed prediction
PRO_0000372443Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi47 – 471N-linked (GlcNAc...) Reviewed prediction
Glycosylationi80 – 801N-linked (GlcNAc...) Reviewed prediction
Glycosylationi94 – 941N-linked (GlcNAc...) Reviewed prediction
Glycosylationi125 – 1251N-linked (GlcNAc...) Reviewed prediction
Glycosylationi162 – 1621N-linked (GlcNAc...) Reviewed prediction
Glycosylationi181 – 1811N-linked (GlcNAc...) Reviewed prediction
Glycosylationi193 – 1931N-linked (GlcNAc...) Reviewed prediction
Glycosylationi217 – 2171N-linked (GlcNAc...) Reviewed prediction
Glycosylationi279 – 2791N-linked (GlcNAc...) Reviewed prediction
Glycosylationi309 – 3091N-linked (GlcNAc...) Reviewed prediction
Glycosylationi365 – 3651N-linked (GlcNAc...) Reviewed prediction
Glycosylationi390 – 3901N-linked (GlcNAc...) Reviewed prediction
Glycosylationi491 – 4911N-linked (GlcNAc...) Reviewed prediction
Glycosylationi515 – 5151N-linked (GlcNAc...) Reviewed prediction
Glycosylationi524 – 5241N-linked (GlcNAc...) Reviewed prediction
Glycosylationi543 – 5431N-linked (GlcNAc...) Reviewed prediction
Glycosylationi567 – 5671N-linked (GlcNAc...) Reviewed prediction
Glycosylationi584 – 5841N-linked (GlcNAc...) Reviewed prediction
Glycosylationi598 – 5981N-linked (GlcNAc...) Reviewed prediction
Glycosylationi630 – 6301N-linked (GlcNAc...) Reviewed prediction
Glycosylationi634 – 6341N-linked (GlcNAc...) Reviewed prediction
Glycosylationi642 – 6421N-linked (GlcNAc...) Reviewed prediction
Glycosylationi648 – 6481N-linked (GlcNAc...) Reviewed prediction
Glycosylationi652 – 6521N-linked (GlcNAc...) Reviewed prediction
Glycosylationi658 – 6581N-linked (GlcNAc...) Reviewed prediction
Lipidationi680 – 6801GPI-anchor amidated asparagine Reviewed prediction

Post-translational modificationi

The GPI-anchor is attached to the protein in the endoplasmic reticulum and serves to target the protein to the cell surface. There, the glucosamine-inositol phospholipid moiety is cleaved off and the GPI-modified mannoprotein is covalently attached via its lipidless GPI glycan remnant to the 1,6-beta-glucan of the outer cell wall layer.

Keywords - PTMi

Glycoprotein, GPI-anchor, Lipoprotein

Proteomic databases

MaxQBiQ03674.
PaxDbiQ03674.
PeptideAtlasiQ03674.

Expressioni

Gene expression databases

GenevestigatoriQ03674.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
YHR080CP388001EBI-2079187,EBI-24597

Protein-protein interaction databases

BioGridi35176. 54 interactions.
STRINGi4932.YMR006C.

Structurei

3D structure databases

ProteinModelPortaliQ03674.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini36 – 588553PLA2c
Add
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi369 – 3724Poly-Asp
Compositional biasi657 – 66711Poly-Ser
Add
BLAST
Compositional biasi671 – 6744Poly-Ser

Sequence similaritiesi

Belongs to the lysophospholipase family.
Contains 1 PLA2c domain.

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiNOG257248.
GeneTreeiENSGT00510000051940.
HOGENOMiHOG000189547.
KOiK13333.
OMAiHAPNEND.
OrthoDBiEOG7N37NC.

Family and domain databases

InterProiIPR016035. Acyl_Trfase/lysoPLipase.
IPR002642. LysoPLipase_cat_dom.
[Graphical view]
PfamiPF01735. PLA2_B. 1 hit.
[Graphical view]
SMARTiSM00022. PLAc. 1 hit.
[Graphical view]
SUPFAMiSSF52151. SSF52151. 1 hit.
PROSITEiPS51210. PLA2C. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q03674-1 [UniParc]FASTAAdd to Basket

« Hide

MQLRNILQAS SLISGLSLAA DSSSTTGDGY APSIIPCPSD DTSLVRNASG    50
LSTAETDWLK KRDAYTKEAL HSFLSRATSN FSDTSLLSTL FSSNSSNVPK 100
IGIACSGGGY RAMLGGAGMI AAMDNRTDGA NEHGLGGLLQ SSTYLSGLSG 150
GNWLTGTLAW NNWTSVQEIV DHMSESDSIW NITKSIVNPG GSNLTYTIER 200
WESIVQEVQA KSDAGFNISL SDLWARALSY NFFPSLPDAG SALTWSSLRD 250
VDVFKNGEMP LPITVADGRY PGTTVINLNA TLFEFTPFEM GSWDPSLNAF 300
TDVKYLGTNV TNGKPVNKDQ CVSGYDNAGF VIATSASLFN EFSLEASTST 350
YYKMINSFAN KYVNNLSQDD DDIAIYAANP FKDTEFVDRN YTSSIVDADD 400
LFLVDGGEDG QNLPLVPLIK KERDLDVVFA LDISDNTDES WPSGVCMTNT 450
YERQYSKQGK GMAFPYVPDV NTFLNLGLTN KPTFFGCDAK NLTDLEYIPP 500
LVVYIPNTKH SFNGNQSTLK MNYNVTERLG MIRNGFEAAT MGNFTDDSNF 550
LGCIGCAIIR RKQESLNATL PPECTKCFAD YCWNGTLSTS ANPELSGNST 600
YQSGAIASAI SEATDGIPIT ALLGSSTSGN TTSNSTTSTS SNVTSNSNSS 650
SNTTLNSNSS SSSISSSTAR SSSSTANKAN AAAISYANTN TLMSLLGAIT 700
ALFGLI 706
Length:706
Mass (Da):75,455
Last modified:November 1, 1997 - v1
Checksum:i5E7BF22C77780DC2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF129165 Genomic DNA. Translation: AAD28616.1.
Z48613 Genomic DNA. Translation: CAA88521.1.
AY693181 Genomic DNA. Translation: AAT93200.1.
BK006946 Genomic DNA. Translation: DAA09905.1.
PIRiS53035.
RefSeqiNP_013719.1. NM_001182502.1.

Genome annotation databases

EnsemblFungiiYMR006C; YMR006C; YMR006C.
GeneIDi855018.
KEGGisce:YMR006C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF129165 Genomic DNA. Translation: AAD28616.1 .
Z48613 Genomic DNA. Translation: CAA88521.1 .
AY693181 Genomic DNA. Translation: AAT93200.1 .
BK006946 Genomic DNA. Translation: DAA09905.1 .
PIRi S53035.
RefSeqi NP_013719.1. NM_001182502.1.

3D structure databases

ProteinModelPortali Q03674.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 35176. 54 interactions.
STRINGi 4932.YMR006C.

Proteomic databases

MaxQBi Q03674.
PaxDbi Q03674.
PeptideAtlasi Q03674.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YMR006C ; YMR006C ; YMR006C .
GeneIDi 855018.
KEGGi sce:YMR006C.

Organism-specific databases

CYGDi YMR006c.
SGDi S000004608. PLB2.

Phylogenomic databases

eggNOGi NOG257248.
GeneTreei ENSGT00510000051940.
HOGENOMi HOG000189547.
KOi K13333.
OMAi HAPNEND.
OrthoDBi EOG7N37NC.

Enzyme and pathway databases

BioCyci MetaCyc:YMR006C-MONOMER.
YEAST:YMR006C-MONOMER.

Miscellaneous databases

NextBioi 978201.

Gene expression databases

Genevestigatori Q03674.

Family and domain databases

InterProi IPR016035. Acyl_Trfase/lysoPLipase.
IPR002642. LysoPLipase_cat_dom.
[Graphical view ]
Pfami PF01735. PLA2_B. 1 hit.
[Graphical view ]
SMARTi SM00022. PLAc. 1 hit.
[Graphical view ]
SUPFAMi SSF52151. SSF52151. 1 hit.
PROSITEi PS51210. PLA2C. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The PLB2 gene of Saccharomyces cerevisiae confers resistance to lysophosphatidylcholine and encodes a phospholipase B/lysophospholipase."
    Fyrst H., Oskouian B., Kuypers F.A., Saba J.D.
    Biochemistry 38:5864-5871(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], CHARACTERIZATION.
    Strain: DG338.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  3. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  4. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  5. "Characterization and function in vivo of two novel phospholipases B/lysophospholipases from Saccharomyces cerevisiae."
    Merkel O., Fido M., Mayr J.A., Prueger H., Raab F., Zandonella G., Kohlwein S.D., Paltauf F.
    J. Biol. Chem. 274:28121-28127(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, SUBCELLULAR LOCATION.
  6. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  7. "Comprehensive proteomic analysis of Saccharomyces cerevisiae cell walls: identification of proteins covalently attached via glycosylphosphatidylinositol remnants or mild alkali-sensitive linkages."
    Yin Q.Y., de Groot P.W.J., Dekker H.L., de Jong L., Klis F.M., de Koster C.G.
    J. Biol. Chem. 280:20894-20901(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION, IDENTIFICATION BY MASS SPECTROMETRY, GPI-ANCHOR.

Entry informationi

Entry nameiPLB2_YEAST
AccessioniPrimary (citable) accession number: Q03674
Secondary accession number(s): D6VZI1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: July 9, 2014
This is version 112 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 623 molecules/cell in log phase SD medium.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  3. Yeast chromosome XIII
    Yeast (Saccharomyces cerevisiae) chromosome XIII: entries and gene names

External Data

Dasty 3

Similar proteinsi