Q03200 (LIRP1_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Light-regulated protein

Gene names

Name:	LIR1
Ordered Locus Names:	Os01g0102900, LOC_Os01g01340
ORF Names:	P0436E04.2, P0455C04.23, P0672D08.50

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	128 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at transcript level

General annotation (Comments)

Induction

Expression is controlled by light and by a circadian clock.

Ontologies

Keywords
Domain	Repeat Signal
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 21	21	Potential
	Chain	22 – 128	107	Light-regulated protein Potential		PRO_0000021599
Regions
	Repeat	58 – 72	15	1
	Repeat	111 – 125	15	2
	Region	58 – 125	68	2 X 15 AA approximate repeats

Sequences

	Sequence		Length	Mass (Da)
	Q03200 [UniParc]. Last modified October 1, 1993. Version 1. Checksum: 389D19D008EBD4D2	FASTA	128	13,317
	10 20 30 40 50 60 MQTAASSVVG LSAVLPAAVK GRSLQIQAPR RVALRVRAAA AAVAVEAAEV DYSSNISVFP 70 80 90 100 110 120 MEACDLIGGE ACNVQMYPEA KLSSSAAVAV SRAAAEEVDR DYLSYDEPTT VFPEEACDDL GGEFCKAT

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Circadian rhythmicity in the expression of a novel light-regulated rice gene." Reimmann C., Dudler R. Plant Mol. Biol. 22:165-170(1993) [PubMed: 8499615] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. Strain: cv. Nohrin.
[2]	"The genome sequence and structure of rice chromosome 1." Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T. Nature 420:312-316(2002) [PubMed: 12447438] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.

Cross-references

Sequence databases
EMBL GenBank DDBJ	X68807 mRNA. Translation: CAA48706.1. AP002818 Genomic DNA. Translation: BAB16320.1. AP002969 Genomic DNA. Translation: BAB92145.1. AP003727 Genomic DNA. Translation: BAD45513.1.
PIR	S33632.
RefSeq	NP_001041753.1. NM_001048288.1.
UniGene	Os.38378.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q03200.
Proteomic databases
PRIDE	Q03200.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4326442.
KEGG	osa:4326442.
Organism-specific databases
Gramene	Q03200.
Phylogenomic databases
OMA	FPMEACD.
PhylomeDB	Q03200.
Family and domain databases
InterPro	IPR009856. Lir1. [Graphical view]
Pfam	PF07207. Lir1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

LIRP1_ORYSJ

Accession

Primary (citable) accession number: Q03200
Secondary accession number(s): Q7F737

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 1, 1993
Last sequence update:	October 1, 1993
Last modified:	December 14, 2011
This is version 48 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program