UPF0010 protein YMR099C - Saccharomyces cerevisiae (Baker's yeast)

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Reviewed, UniProtKB/Swiss-Prot Q03161 (YMY9_YEAST)

Last modified November 24, 2009. Version 65. History...

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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein names

Recommended name:
UPF0010 protein YMR099C

Gene names

Ordered Locus Names:	YMR099C
ORF Names:	YM6543.06C

Organism

Saccharomyces cerevisiae (Baker's yeast) [Complete proteome]

Taxonomic identifier

4932 [NCBI]

Taxonomic lineage

Eukaryota › Fungi › Dikarya › Ascomycota › Saccharomycotina › Saccharomycetes › Saccharomycetales › Saccharomycetaceae › Saccharomyces

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Protein attributes

Sequence length	297 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

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General annotation (Comments)

Miscellaneous	Present with 8580 molecules/cell in log phase SD medium. Ref.2
Sequence similarities	Belongs to the UPF0010 (mutarotase-related) family.

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Ontologies

Keywords
PTM	Phosphoprotein
Technical term	3D-structure Complete proteome
Gene Ontology (GO)
Biological process	cellular carbohydrate metabolic process Inferred by curator. Source: SGD
Cellular component	cytoplasm Inferred from direct assay. Source: SGD nucleus Inferred from direct assay. Source: SGD
Molecular function	carbohydrate binding Inferred from electronic annotation. Source: InterPro glucose-6-phosphate 1-epimerase activity Inferred from direct assay. Source: SGD
Complete GO annotation...

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Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 297

297

UPF0010 protein YMR099C

PRO_0000213035

Sites

Active site

159

Potential

Amino acid modifications

Modified residue

Phosphothreonine Ref.3

Secondary structure

297

Helix Strand Turn

Details...

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Sequences

Sequence

Length

Mass (Da)

Tools

Q03161-1 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 122BDC460BB9A32B
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FASTA

297

33,956

        10         20         30         40         50         60 
MPIKETDKEV VLTHPADETT SVHILKYGAT VYSWKLKSEE QLWLSTAAKL DGSKPVRGGI 

        70         80         90        100        110        120 
PLVFPVFGKN STDEHLSKLP QHGLARNSTW EFLGQTKENP PTVQFGLKPE IANPELTKLW 

       130        140        150        160        170        180 
PMDYLLILTV ELGSDYLKTA IEVENTSSSK ELKFNWLFHT YFRIEDIEGT MVSNLAGMKL 

       190        200        210        220        230        240 
YDQLLKESYV DKHPVVTFNQ ETDVIYQNVS AERAIQIVDK GVQIHTLKRY NLPDTVVWNP 

       250        260        270        280        290 
WIEKSQGMAD FEPKTGYQQM ICIEPGHVHD FISLAPGKKW NAYQLLCKEE LKYQAIQ

« Hide

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References

[1]	"The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII." Bowman S., Churcher C.M., Badcock K., Brown D., Chillingworth T., Connor R., Dedman K., Devlin K., Gentles S., Hamlin N., Hunt S., Jagels K., Lye G., Moule S., Odell C., Pearson D., Rajandream M.A., Rice P. Barrell B.G. Nature 387:90-93(1997) [PubMed: 9169872] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 204511 / S288c / AB972.
[2]	"Global analysis of protein expression in yeast." Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S. Nature 425:737-741(2003) [PubMed: 14562106] [Abstract] Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
[3]	"A multidimensional chromatography technology for in-depth phosphoproteome analysis." Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H. Mol. Cell. Proteomics 7:1389-1396(2008) [PubMed: 18407956] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-89, MASS SPECTROMETRY.
+	Additional computationally mapped references.

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Cross-references

Sequence databases

Z49807 Genomic DNA. Translation: CAA89900.1.

PIR

S55085.

RefSeq

NP_013817.1.

3D structure databases

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2CIQ	X-ray	1.70	A	1-297	[»]
2CIR	X-ray	1.60	A	1-297	[»]
2CIS	X-ray	1.62	A	1-297	[»]

ModBase

Search...

Protein-protein interaction databases

STRING

Q03161.

Proteomic databases

PeptideAtlas

Q03161.

Genome annotation databases

Ensembl

YMR099C; YMR099C; YMR099C; Saccharomyces cerevisiae. [Genome view]

GeneID

855125.

KEGG

sce:YMR099C.

NMPDR

fig|4932.3.peg.4864.

Organism-specific databases

CYGD

YMR099c.

SGD

S000004705. YMR099C.

Phylogenomic databases

HOGENOM

Q03161.

OMA

SKLPQHG

OrthoDB

EOG9TQNSK

Gene expression databases

ArrayExpress

Q03161.

Genevestigator

Q03161.

GermOnline

YMR099C. Saccharomyces cerevisiae.

Family and domain databases

InterPro

IPR008183. Ald1_epimerase.
IPR011013. Glyco_hydro-type_carb-bd.
IPR014718. Glyco_hydro-type_carb-bd_sub.
[Graphical view]

Gene3D

G3DSA:2.70.98.10. Glyco_hydro_42_D5. 1 hit.

Pfam

PF01263. Aldose_epim. 1 hit.
[Graphical view]

ProtoNet

Search...

Other Resources

NextBio

978487.

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Entry information

Entry name

YMY9_YEAST

Accession

Primary (citable) accession number: Q03161

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	November 24, 2009
This is version 65 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

FPAP (Fungal Proteome Annotation Project)

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