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Protein

Ribosomal RNA small subunit methyltransferase B

Gene

LACR_2084

Organism
Lactococcus lactis subsp. cremoris (strain SK11)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

MethyltransferaseSAAS annotationImported, Transferase

Keywords - Biological processi

rRNA processingSAAS annotation

Keywords - Ligandi

RNA-bindingSAAS annotation, S-adenosyl-L-methionineSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA small subunit methyltransferase BSAAS annotation (EC:2.1.1.-SAAS annotation)
Gene namesi
Ordered Locus Names:LACR_2084Imported
OrganismiLactococcus lactis subsp. cremoris (strain SK11)Imported
Taxonomic identifieri272622 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesStreptococcaceaeLactococcus
Proteomesi
  • UP000000240 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CytoplasmSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliQ02WW1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini139 – 422SAM_MT_RSMB_NOPInterPro annotationAdd BLAST284

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.SAAS annotation

Phylogenomic databases

HOGENOMiHOG000037300.
KOiK03500.
OMAiHIGLYQL.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR018314. Fmu/NOL1/Nop2p_CS.
IPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiPS01153. NOL1_NOP2_SUN. 1 hit.
PS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q02WW1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTKNARQTAL DVLNDIFGND AYANISLDRN LRDSELSTVD KGFVTALVYG
60 70 80 90 100
VVSKKALLEW YITPLLKKEP KPWAKMLLLL TIYQVLFMDK VPTSAAVDEA
110 120 130 140 150
VKIAKRHDGQ ATANFINAVL RNFMRSEHRN EEPKDWETKY SMPKLLLDKM
160 170 180 190 200
VRQFGGKRTG EILESLEKPS HVSLRKIDPT VEIAGTRPSL LTETALIADS
210 220 230 240 250
GNFSIIEEFQ TGRITIQDET SQLVAPQLEL EGTEEVLDAC AAPGGKSTHM
260 270 280 290 300
AQYLTTGHIT ALDLYEHKLD LINQNAQRQH VADKITTQKA DATMIYENFG
310 320 330 340 350
PEKFDRILVD APCSGIGLIR RKPDIRYRKE SSDFIDLQKI QLEILNSASK
360 370 380 390 400
SLKKSGIMVY STCTIFDEEN FDVVHEFLEN HPNFEQVEIS NEKPEVIKEG
410 420
CLFITPEMYH TDGFFIAKFK KIGE
Length:424
Mass (Da):47,950
Last modified:November 14, 2006 - v1
Checksum:iBB1D5E3D1E3585CF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000425 Genomic DNA. Translation: ABJ73561.1.
RefSeqiWP_011676899.1. NC_008527.1.

Genome annotation databases

EnsemblBacteriaiABJ73561; ABJ73561; LACR_2084.
KEGGillc:LACR_2084.
PATRICi22291043. VBILacLac38071_2264.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000425 Genomic DNA. Translation: ABJ73561.1.
RefSeqiWP_011676899.1. NC_008527.1.

3D structure databases

ProteinModelPortaliQ02WW1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABJ73561; ABJ73561; LACR_2084.
KEGGillc:LACR_2084.
PATRICi22291043. VBILacLac38071_2264.

Phylogenomic databases

HOGENOMiHOG000037300.
KOiK03500.
OMAiHIGLYQL.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR018314. Fmu/NOL1/Nop2p_CS.
IPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiPS01153. NOL1_NOP2_SUN. 1 hit.
PS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ02WW1_LACLS
AccessioniPrimary (citable) accession number: Q02WW1
Entry historyi
Integrated into UniProtKB/TrEMBL: November 14, 2006
Last sequence update: November 14, 2006
Last modified: November 30, 2016
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.