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Protein
Submitted name:

Uncharacterized protein

Gene

pelD

Organism
Pseudomonas aeruginosa (strain UCBPP-PA14)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi158 – 1581Magnesium 1Combined sources
Metal bindingi158 – 1581Magnesium 2Combined sources
Binding sitei161 – 1611Cyclic diguanosine monophosphateCombined sources
Metal bindingi163 – 1631Magnesium 3; via carbonyl oxygenCombined sources
Metal bindingi194 – 1941Magnesium 1Combined sources
Metal bindingi205 – 2051Magnesium 3; via amide nitrogenCombined sources
Metal bindingi215 – 2151Magnesium 3; via carbonyl oxygenCombined sources
Metal bindingi362 – 3621Magnesium 4; via carbonyl oxygenCombined sources
Metal bindingi365 – 3651Magnesium 5; via carbonyl oxygenCombined sources
Metal bindingi367 – 3671Magnesium 2Combined sources
Metal bindingi372 – 3721Magnesium 4Combined sources
Metal bindingi390 – 3901Magnesium 1; via carbonyl oxygenCombined sources
Metal bindingi391 – 3911Magnesium 2Combined sources
Binding sitei391 – 3911Cyclic diguanosine monophosphateCombined sources
Metal bindingi399 – 3991Magnesium 4Combined sources
Metal bindingi399 – 3991Magnesium 5Combined sources
Metal bindingi402 – 4021Magnesium 5Combined sources
Binding sitei402 – 4021Cyclic diguanosine monophosphateCombined sources

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi367 – 3704Cyclic diguanosine monophosphateCombined sources

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. nucleotide binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

MagnesiumCombined sources, Metal-bindingCombined sources, Nucleotide-bindingCombined sources

Enzyme and pathway databases

BioCyciPAER208963:GI5K-1983-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:pelDImported
Ordered Locus Names:PA14_24510Imported
OrganismiPseudomonas aeruginosa (strain UCBPP-PA14)Imported
Taxonomic identifieri208963 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000653 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi208963.PA14_24510.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4DMZX-ray2.10A/B156-455[»]
4DN0X-ray2.30A156-455[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG12548.
HOGENOMiHOG000247715.
OMAiNECGLND.
OrthoDBiEOG6ND0FD.

Family and domain databases

Gene3Di3.30.450.40. 1 hit.
InterProiIPR003018. GAF.
IPR029016. GAF_dom_like.
IPR025201. KdpD_TM.
[Graphical view]
PfamiPF13493. DUF4118. 1 hit.
PF13492. GAF_3. 1 hit.
[Graphical view]
SMARTiSM00065. GAF. 1 hit.
[Graphical view]
SUPFAMiSSF55781. SSF55781. 1 hit.

Sequencei

Sequence statusi: Complete.

Q02PM6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAHKDFTLA PRASGSVSWV ETLVISALAL GLGWWFSPDD PLQVNATFPW
60 70 80 90 100
VILAPLLLGM RYGFVRGLAS AALLVAALFA FRVQGVEAYA QVPAAFIVGV
110 120 130 140 150
LLCAMLVGEF RDIWERRLER LELANEYRQL RLDEFTRAHH ILRISHDRLE
160 170 180 190 200
QRVAGNDQSL RSSLLGLRQL LRELPGDEAP LDALAETVLA LLAQYGSLRI
210 220 230 240 250
AGLYRVRHDR TPEPQPLATL GEMPVLDADD LLVRTCLERG ELVSVRQELL
260 270 280 290 300
ERGEQRAHSA LQVCVPLVDT DGRILALLAV EQMPFFVFNE RTFSLLAILA
310 320 330 340 350
GHIADLLQSD RRALQLADID AQRFSQYLKR SLLDARDHGL PACLYAFELT
360 370 380 390 400
DARYGEEVQR LLEGSQRGLD VQLRLRNDEG RRVLLVLLPL TSAEGSQGYL
410 420 430 440 450
QRLRILFAER FGQARELESL GVRIRQYELD AGNDRQALGH FLFNECGLND

QQVAV
Length:455
Mass (Da):51,075
Last modified:November 14, 2006 - v1
Checksum:i8D024D52D32EF6C2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000438 Genomic DNA. Translation: ABJ12297.1.
RefSeqiYP_790110.1. NC_008463.1.

Genome annotation databases

EnsemblBacteriaiABJ12297; ABJ12297; PA14_24510.
KEGGipau:PA14_24510.
PATRICi19850053. VBIPseAer79785_1987.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000438 Genomic DNA. Translation: ABJ12297.1.
RefSeqiYP_790110.1. NC_008463.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4DMZX-ray2.10A/B156-455[»]
4DN0X-ray2.30A156-455[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi208963.PA14_24510.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABJ12297; ABJ12297; PA14_24510.
KEGGipau:PA14_24510.
PATRICi19850053. VBIPseAer79785_1987.

Phylogenomic databases

eggNOGiNOG12548.
HOGENOMiHOG000247715.
OMAiNECGLND.
OrthoDBiEOG6ND0FD.

Enzyme and pathway databases

BioCyciPAER208963:GI5K-1983-MONOMER.

Family and domain databases

Gene3Di3.30.450.40. 1 hit.
InterProiIPR003018. GAF.
IPR029016. GAF_dom_like.
IPR025201. KdpD_TM.
[Graphical view]
PfamiPF13493. DUF4118. 1 hit.
PF13492. GAF_3. 1 hit.
[Graphical view]
SMARTiSM00065. GAF. 1 hit.
[Graphical view]
SUPFAMiSSF55781. SSF55781. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: UCBPP-PA14Imported.
  2. "Structure of the cytoplasmic region of PelD, a degenerate diguanylate cyclase receptor that regulates exopolysaccharide production in Pseudomonas aeruginosa."
    Whitney J.C., Colvin K.M., Marmont L.S., Robinson H., Parsek M.R., Howell P.L.
    J. Biol. Chem. 287:23582-23593(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.10 ANGSTROMS) OF 156-455 IN COMPLEX WITH CYCLIC DIGUANOSINE MONOPHOSPHATE AND MAGNESIUM.

Entry informationi

Entry nameiQ02PM6_PSEAB
AccessioniPrimary (citable) accession number: Q02PM6
Entry historyi
Integrated into UniProtKB/TrEMBL: November 14, 2006
Last sequence update: November 14, 2006
Last modified: April 29, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.