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Q02PM6 (Q02PM6_PSEAB) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:pelD EMBL ABJ12297.1
Ordered Locus Names:PA14_24510 EMBL ABJ12297.1
OrganismPseudomonas aeruginosa (strain UCBPP-PA14) [Complete proteome] [HAMAP] EMBL ABJ12297.1
Taxonomic identifier208963 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length455 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding367 – 3704Cyclic diguanosine monophosphate PDB 4DN0

Sites

Metal binding1581Magnesium 1 PDB 4DMZ
Metal binding1581Magnesium 2 PDB 4DMZ
Metal binding1631Magnesium 3; via carbonyl oxygen PDB 4DMZ
Metal binding1941Magnesium 1 PDB 4DMZ
Metal binding2051Magnesium 3; via amide nitrogen PDB 4DMZ
Metal binding2151Magnesium 3; via carbonyl oxygen PDB 4DMZ
Metal binding3621Magnesium 4; via carbonyl oxygen PDB 4DMZ
Metal binding3651Magnesium 5; via carbonyl oxygen PDB 4DMZ
Metal binding3671Magnesium 2 PDB 4DMZ
Metal binding3721Magnesium 4 PDB 4DMZ
Metal binding3901Magnesium 1; via carbonyl oxygen PDB 4DMZ
Metal binding3911Magnesium 2 PDB 4DMZ
Metal binding3991Magnesium 4 PDB 4DMZ
Metal binding3991Magnesium 5 PDB 4DMZ
Metal binding4021Magnesium 5 PDB 4DMZ
Binding site1611Cyclic diguanosine monophosphate PDB 4DN0
Binding site3741Sulfate PDB 4DN0
Binding site3911Cyclic diguanosine monophosphate PDB 4DN0
Binding site4021Cyclic diguanosine monophosphate PDB 4DN0

Sequences

Sequence LengthMass (Da)Tools
Q02PM6 [UniParc].

Last modified November 14, 2006. Version 1.
Checksum: 8D024D52D32EF6C2

FASTA45551,075
        10         20         30         40         50         60 
MSAHKDFTLA PRASGSVSWV ETLVISALAL GLGWWFSPDD PLQVNATFPW VILAPLLLGM 

        70         80         90        100        110        120 
RYGFVRGLAS AALLVAALFA FRVQGVEAYA QVPAAFIVGV LLCAMLVGEF RDIWERRLER 

       130        140        150        160        170        180 
LELANEYRQL RLDEFTRAHH ILRISHDRLE QRVAGNDQSL RSSLLGLRQL LRELPGDEAP 

       190        200        210        220        230        240 
LDALAETVLA LLAQYGSLRI AGLYRVRHDR TPEPQPLATL GEMPVLDADD LLVRTCLERG 

       250        260        270        280        290        300 
ELVSVRQELL ERGEQRAHSA LQVCVPLVDT DGRILALLAV EQMPFFVFNE RTFSLLAILA 

       310        320        330        340        350        360 
GHIADLLQSD RRALQLADID AQRFSQYLKR SLLDARDHGL PACLYAFELT DARYGEEVQR 

       370        380        390        400        410        420 
LLEGSQRGLD VQLRLRNDEG RRVLLVLLPL TSAEGSQGYL QRLRILFAER FGQARELESL 

       430        440        450 
GVRIRQYELD AGNDRQALGH FLFNECGLND QQVAV 

« Hide

References

« Hide 'large scale' references
[1]"Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial."
Lee D.G., Urbach J.M., Wu G., Liberati N.T., Feinbaum R.L., Miyata S., Diggins L.T., He J., Saucier M., Deziel E., Friedman L., Li L., Grills G., Montgomery K., Kucherlapati R., Rahme L.G., Ausubel F.M.
Genome Biol. 7:R90.1-R90.14(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: UCBPP-PA14 EMBL ABJ12297.1.
[2]"Structure of the cytoplasmic region of PelD, a degenerate diguanylate cyclase receptor that regulates exopolysaccharide production in Pseudomonas aeruginosa."
Whitney J.C., Colvin K.M., Marmont L.S., Robinson H., Parsek M.R., Howell P.L.
J. Biol. Chem. 287:23582-23593(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.10 ANGSTROMS) OF 156-455 IN COMPLEX WITH CYCLIC DIGUANOSINE MONOPHOSPHATE; MAGNESIUM AND SULFATE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000438 Genomic DNA. Translation: ABJ12297.1.
RefSeqYP_790110.1. NC_008463.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4DMZX-ray2.10A/B156-455[»]
4DN0X-ray2.30A156-455[»]
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING208963.PA14_24510.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABJ12297; ABJ12297; PA14_24510.
GeneID4381085.
KEGGpau:PA14_24510.
PATRIC19850053. VBIPseAer79785_1987.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG12548.
HOGENOMHOG000247715.
OMASHERLEN.
OrthoDBEOG6ND0FD.

Enzyme and pathway databases

BioCycPAER208963:GI5K-1983-MONOMER.

Family and domain databases

Gene3D3.30.450.40. 1 hit.
InterProIPR025201. DUF4118.
IPR003018. GAF.
IPR029016. GAF_dom_like.
[Graphical view]
PfamPF13493. DUF4118. 1 hit.
PF13492. GAF_3. 1 hit.
[Graphical view]
SMARTSM00065. GAF. 1 hit.
[Graphical view]
SUPFAMSSF55781. SSF55781. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ02PM6_PSEAB
AccessionPrimary (citable) accession number: Q02PM6
Entry history
Integrated into UniProtKB/TrEMBL: November 14, 2006
Last sequence update: November 14, 2006
Last modified: June 11, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)