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Protein

Putative potassium channel protein RPA4233

Gene

RPA4233

Organism
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi270 – 388119cNMPAdd
BLAST

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Ion channel, Potassium channel

Keywords - Biological processi

Ion transport, Potassium transport, Transport

Keywords - Ligandi

Potassium

Protein family/group databases

TCDBi1.A.1.24.1. the voltage-gated ion channel (vic) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative potassium channel protein RPA4233
Gene namesi
Ordered Locus Names:RPA4233
OrganismiRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Taxonomic identifieri258594 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
Proteomesi
  • UP000001426 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei35 – 5521HelicalSequence analysisAdd
BLAST
Transmembranei65 – 8521HelicalSequence analysisAdd
BLAST
Transmembranei164 – 18421HelicalSequence analysisAdd
BLAST
Transmembranei202 – 22221HelicalSequence analysisAdd
BLAST
Transmembranei225 – 24521HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 412412Putative potassium channel protein RPA4233PRO_0000054103Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi258594.RPA4233.

Structurei

3D structure databases

ProteinModelPortaliQ02006.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi210 – 2156Selectivity filterBy similarity

Sequence similaritiesi

Belongs to the potassium channel family.Curated
Contains 1 cyclic nucleotide-binding domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105EYW. Bacteria.
COG0664. LUCA.
COG1226. LUCA.
HOGENOMiHOG000271293.
KOiK10716.
OMAiMYFIAEG.
OrthoDBiEOG6DJZ5S.
PhylomeDBiQ02006.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR018490. cNMP-bd-like.
IPR018488. cNMP-bd_CS.
IPR000595. cNMP-bd_dom.
IPR005821. Ion_trans_dom.
IPR014710. RmlC-like_jellyroll.
IPR028325. VG_K_chnl.
[Graphical view]
PANTHERiPTHR11537. PTHR11537. 1 hit.
PfamiPF00027. cNMP_binding. 1 hit.
PF00520. Ion_trans. 1 hit.
[Graphical view]
PRINTSiPR00169. KCHANNEL.
SMARTiSM00100. cNMP. 1 hit.
[Graphical view]
SUPFAMiSSF51206. SSF51206. 1 hit.
PROSITEiPS00889. CNMP_BINDING_2. 1 hit.
PS50042. CNMP_BINDING_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q02006-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRDETPAYLR ARHYFYEILE SQAQTSRMGV IVNRFIVFFI VLSVGITVME
60 70 80 90 100
SVPAMREDYG RLFQALELLC LVMFSIEYYI RIWIAPEHLP YHHMSPLRAA
110 120 130 140 150
WAYMISPQGI VDCISVMPLW IALFGPDDLR VLIILRMLRL LKFARYSSGM
160 170 180 190 200
RSLLEVLESE RRALMACLVI LACATLVSAT AMHIAEGHVQ PEKFGTIPDA
210 220 230 240 250
MWWAIVTLST IGYGDVVPAT GIGRMVASAT IICGLIMIAL PVGIVANAFS
260 270 280 290 300
EVIHRRDFIV NWSMVARVPL FSHLTAGDIA HIMQLLQARQ IERGEVVFRR
310 320 330 340 350
GEPATAMYFI AEGDVEIELG PEDKGRRIRL GTGHFFGEIA VLKRVERSAT
360 370 380 390 400
VKAVSRTRLL VLDGADLRAL IAREPSIARK INQIVEGRTG RNLNLEIADL
410
EGQADVSVEE NA
Length:412
Mass (Da):46,121
Last modified:February 16, 2004 - v2
Checksum:i6CAD64DFA5E776B6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572606 Genomic DNA. Translation: CAE29674.1.
M92426 Genomic DNA. Translation: AAA26091.1.
PIRiC43334.
RefSeqiWP_011159768.1. NC_005296.1.

Genome annotation databases

EnsemblBacteriaiCAE29674; CAE29674; RPA4233.
KEGGirpa:RPA4233.
PATRICi23293057. VBIRhoPal84835_4442.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572606 Genomic DNA. Translation: CAE29674.1.
M92426 Genomic DNA. Translation: AAA26091.1.
PIRiC43334.
RefSeqiWP_011159768.1. NC_005296.1.

3D structure databases

ProteinModelPortaliQ02006.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi258594.RPA4233.

Protein family/group databases

TCDBi1.A.1.24.1. the voltage-gated ion channel (vic) superfamily.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAE29674; CAE29674; RPA4233.
KEGGirpa:RPA4233.
PATRICi23293057. VBIRhoPal84835_4442.

Phylogenomic databases

eggNOGiENOG4105EYW. Bacteria.
COG0664. LUCA.
COG1226. LUCA.
HOGENOMiHOG000271293.
KOiK10716.
OMAiMYFIAEG.
OrthoDBiEOG6DJZ5S.
PhylomeDBiQ02006.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR018490. cNMP-bd-like.
IPR018488. cNMP-bd_CS.
IPR000595. cNMP-bd_dom.
IPR005821. Ion_trans_dom.
IPR014710. RmlC-like_jellyroll.
IPR028325. VG_K_chnl.
[Graphical view]
PANTHERiPTHR11537. PTHR11537. 1 hit.
PfamiPF00027. cNMP_binding. 1 hit.
PF00520. Ion_trans. 1 hit.
[Graphical view]
PRINTSiPR00169. KCHANNEL.
SMARTiSM00100. cNMP. 1 hit.
[Graphical view]
SUPFAMiSSF51206. SSF51206. 1 hit.
PROSITEiPS00889. CNMP_BINDING_2. 1 hit.
PS50042. CNMP_BINDING_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-98 / CGA009.
  2. "Anaerobic growth of Rhodopseudomonas palustris on 4-hydroxybenzoate is dependent on AadR, a member of the cyclic AMP receptor protein family of transcriptional regulators."
    Dispensa M., Thomas C.T., Kim M.-K., Perrotta J.A., Gibson J., Harwood C.S.
    J. Bacteriol. 174:5803-5813(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-15.
    Strain: ATCC BAA-98 / CGA009.

Entry informationi

Entry nameiY4233_RHOPA
AccessioniPrimary (citable) accession number: Q02006
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: February 16, 2004
Last modified: November 11, 2015
This is version 96 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.