Q01WD3 (Q01WD3_SOLUE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ABJ86032.1

Gene names

Ordered Locus Names:

Acid_5077

Organism

Solibacter usitatus (strain Ellin6076) [Complete proteome] [HAMAP] EMBL ABJ86032.1

Taxonomic identifier

234267 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Fibrobacteres/Acidobacteria group › Acidobacteria › Solibacteres › Solibacterales › Solibacteraceae › Candidatus Solibacter › Solibacter usitatus

Protein attributes

Sequence length	338 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABJ86032.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q01WD3 [UniParc]. Last modified November 14, 2006. Version 1. Checksum: 47F83F88203FC697	FASTA	338	37,085
	10 20 30 40 50 60 MTMAPMEALA ALAVPEGPEW QYEPKWDGFR CIAFRRGDEV KLQSKSGQPL GRYFPDIVGA 70 80 90 100 110 120 LQRVRAKEFV LDGELVIPVE GDLSFNELQL RLHPAATRVN MLAAKHPALY IVFDLLTGDL 130 140 150 160 170 180 PRRPLSERRA KLEEFAARNF EGIKGLGLSP ATGSLPDARK WLRTMGGGLD GIIAKRLDAE 190 200 210 220 230 240 YEPGERSGAV QKIKSLRSAD CVVGGFRYAT SGKVVGSLLL GLYDDEGLLH HVGYTSSIAG 250 260 270 280 290 300 AEKAALTKKL EALREQPGFT GRAPGAPSRW STERSGEFEP LAPKLVVEVQ YDHFTGGRFR 310 320 330 HGTKFLRWRH DKAPSQCLMS QVEHETRSPL GLLAPAAG

References

[1]

"Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils." Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M. , DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. Appl. Environ. Microbiol. 75:2046-2056(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Ellin6076.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000473 Genomic DNA. Translation: ABJ86032.1.
RefSeq	YP_826317.1. NC_008536.1.
3D structure databases
ProteinModelPortal	Q01WD3.
ModBase	Search...
Protein-protein interaction databases
STRING	234267.Acid_5077.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABJ86032; ABJ86032; Acid_5077.
GeneID	4431949.
KEGG	sus:Acid_5077.
PATRIC	32012700. VBICanSol30224_5311.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000222508.
KO	K01971.
OMA	VERVCEV.
ProtClustDB	PRK08224.
Enzyme and pathway databases
BioCyc	SUSI234267:GHSK-5118-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q01WD3_SOLUE

Accession

Primary (citable) accession number: Q01WD3

Entry history

Integrated into UniProtKB/TrEMBL:	November 14, 2006
Last sequence update:	November 14, 2006
Last modified:	May 29, 2013
This is version 40 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)