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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Acid_6821

Organism
Solibacter usitatus (strain Ellin6076)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSUSI234267:GHSK-6872-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Acid_6821Imported
OrganismiSolibacter usitatus (strain Ellin6076)Imported
Taxonomic identifieri234267 [NCBI]
Taxonomic lineageiBacteriaAcidobacteriaSolibacteresSolibacteralesSolibacteraceaeCandidatus Solibacter
ProteomesiUP000000671: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi234267.Acid_6821.

Structurei

3D structure databases

ProteinModelPortaliQ01RI2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
OMAiVEVKYGQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q01RI2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPPPTSRVRF IEPMLLRRTE HLPEGDGVSY ELKLDGFRAI AYKTGGKVHL
60 70 80 90 100
RSRNDKDFNA KYPVIVKALA HMPDETVIDG EIVALDGVGR PSFSALQNYG
110 120 130 140 150
FSTGPLLYYA FDVMVIAGED VMALPLEDRR ELLRSRVLAK LADPIRESPE
160 170 180 190 200
LVATLPQLIQ SVKAQGLEGP IAKRRDSRYE AGQRSGAWQK MRMNQGQDFV
210 220 230 240 250
IAGYTPSGNG FDALIFGYYD GDRLIYVART RNGFTPASRE KLFRRFRGLE
260 270 280 290 300
TVQCPFANLL EAKVGRWGVG LTAEKMNECK WLRPELVGQF EFLEITPDNH
310 320
LRHSRFIGLR EDKKAREVER DG
Length:322
Mass (Da):36,420
Last modified:November 14, 2006 - v1
Checksum:i52CFCEDFC03EC4DC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000473 Genomic DNA. Translation: ABJ87738.1.
RefSeqiYP_828023.1. NC_008536.1.

Genome annotation databases

EnsemblBacteriaiABJ87738; ABJ87738; Acid_6821.
GeneIDi4425067.
KEGGisus:Acid_6821.
PATRICi32016366. VBICanSol30224_7132.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000473 Genomic DNA. Translation: ABJ87738.1.
RefSeqiYP_828023.1. NC_008536.1.

3D structure databases

ProteinModelPortaliQ01RI2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi234267.Acid_6821.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABJ87738; ABJ87738; Acid_6821.
GeneIDi4425067.
KEGGisus:Acid_6821.
PATRICi32016366. VBICanSol30224_7132.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
OMAiVEVKYGQ.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciSUSI234267:GHSK-6872-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Ellin6076Imported.

Entry informationi

Entry nameiQ01RI2_SOLUE
AccessioniPrimary (citable) accession number: Q01RI2
Entry historyi
Integrated into UniProtKB/TrEMBL: November 14, 2006
Last sequence update: November 14, 2006
Last modified: March 4, 2015
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.