Q01RI2 (Q01RI2_SOLUE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ABJ87738.1

Gene names

Ordered Locus Names:

Acid_6821

Organism

Solibacter usitatus (strain Ellin6076) [Complete proteome] [HAMAP] EMBL ABJ87738.1

Taxonomic identifier

234267 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Fibrobacteres/Acidobacteria group › Acidobacteria › Solibacteres › Solibacterales › Solibacteraceae › Candidatus Solibacter › Solibacter usitatus

Protein attributes

Sequence length	322 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABJ87738.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q01RI2 [UniParc]. Last modified November 14, 2006. Version 1. Checksum: 52CFCEDFC03EC4DC	FASTA	322	36,420
	10 20 30 40 50 60 MPPPTSRVRF IEPMLLRRTE HLPEGDGVSY ELKLDGFRAI AYKTGGKVHL RSRNDKDFNA 70 80 90 100 110 120 KYPVIVKALA HMPDETVIDG EIVALDGVGR PSFSALQNYG FSTGPLLYYA FDVMVIAGED 130 140 150 160 170 180 VMALPLEDRR ELLRSRVLAK LADPIRESPE LVATLPQLIQ SVKAQGLEGP IAKRRDSRYE 190 200 210 220 230 240 AGQRSGAWQK MRMNQGQDFV IAGYTPSGNG FDALIFGYYD GDRLIYVART RNGFTPASRE 250 260 270 280 290 300 KLFRRFRGLE TVQCPFANLL EAKVGRWGVG LTAEKMNECK WLRPELVGQF EFLEITPDNH 310 320 LRHSRFIGLR EDKKAREVER DG

References

[1]

"Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils." Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M. , DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. Appl. Environ. Microbiol. 75:2046-2056(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Ellin6076.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000473 Genomic DNA. Translation: ABJ87738.1.
RefSeq	YP_828023.1. NC_008536.1.
3D structure databases
ProteinModelPortal	Q01RI2.
ModBase	Search...
Protein-protein interaction databases
STRING	234267.Acid_6821.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABJ87738; ABJ87738; Acid_6821.
GeneID	4425067.
KEGG	sus:Acid_6821.
PATRIC	32016366. VBICanSol30224_7132.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000222509.
KO	K01971.
OMA	AVHIEPT.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR014146. DNA_pol_LigD_ligase_dom. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q01RI2_SOLUE

Accession

Primary (citable) accession number: Q01RI2

Entry history

Integrated into UniProtKB/TrEMBL:	November 14, 2006
Last sequence update:	November 14, 2006
Last modified:	May 1, 2013
This is version 40 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)