Q01QJ5 (Q01QJ5_SOLUE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Heparinase II/III family protein EMBL ABJ88075.1

Gene names

Ordered Locus Names:

Acid_7164

Organism

Solibacter usitatus (strain Ellin6076) [Complete proteome] [HAMAP]

Taxonomic identifier

234267 [NCBI]

Taxonomic lineage

Bacteria › Acidobacteria › Solibacteres › Solibacterales › Solibacteraceae › Candidatus Solibacter

Protein attributes

Sequence length	677 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABJ88075.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	alginic acid catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	periplasmic space Inferred from electronic annotation. Source: InterPro
Molecular function	poly(beta-D-mannuronate) lyase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 19	19	Potential EMBL ABJ88075.1
	Chain	20 – 677	658	Potential EMBL ABJ88075.1		PRO_5000005345

Sequences

	Sequence		Length	Mass (Da)
	Q01QJ5 [UniParc]. Last modified November 14, 2006. Version 1. Checksum: D7E8BD219F6F755E	FASTA	677	73,866
	10 20 30 40 50 60 MWGMRIAVGL VMAGCCMAEP RLLLNSGDVA RIKRVAASEP WAAKVVAGLI RDADEWPERH 70 80 90 100 110 120 VREFGLAEWA LPKEGAGWSH NYVCPDHGVR LTQRQGKNLC PIDGKDYHGW PVDYVVYMQR 130 140 150 160 170 180 NDDTAKSARD LGLAWQLTGK REYAEKARRI FNAYSDLYLA LPIHDNNNKL DTKTGARVMS 190 200 210 220 230 240 QTLSEASWLV PLEFGYDLVR DSMPEAERAR FETNVLKGAA AVIRRNQAGK SNWQSWHNAA 250 260 270 280 290 300 LLGAGLLTGD QELVTLAIDG AGGFRFQMRE SVTADGAWFE GSWGYHFFAL TPLLLTREMA 310 320 330 340 350 360 ERAGIALPEA AALKRMLDAP LASLFPDGTL PNFNDSGYAN LASEAPRYDV GYRLFGDRRY 370 380 390 400 410 420 LTVTNGATRG LDALLWGPDK LPSGAAPSLG SELMEAAGVA ILRVAGSDHT VAVKFGPHGG 430 440 450 460 470 480 GHGHYDKLTF ISYAEGARQA ADPGTQAYGA KTHGTWDKTT VAHNTISVDG KQQAEAAGKL 490 500 510 520 530 540 LEWNPGAKVT EIRLAAGPVY PGVEIERTLV HTGEYTLDIA EARSVDGAAH LFDWTYHNFG 550 560 570 580 590 600 SLDTTLPLKP YLGMPQANGY QHLTETRAAS IDDEWMVTFA QEKSRMRVQV MGAPGTTVAA 610 620 630 640 650 660 GNGLGPDLRT AVPFVMARRT APSARFVAVY EPYREAPVVK SVVESAPGVF VVTLAGSRDE 670 IVVTPGKFRY QRTETKK

References

[1]

"Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils." Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M. , DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. Appl. Environ. Microbiol. 75:2046-2056(2009) [PubMed: 19201974] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000473 Genomic DNA. Translation: ABJ88075.1.
RefSeq	YP_828360.1. NC_008536.1.
3D structure databases
ProteinModelPortal	Q01QJ5.
ModBase	Search...
Protein-protein interaction databases
STRING	Q01QJ5.
Protein family/group databases
CAZy	PL17. Polysaccharide Lyase Family 17.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4424815.
GenomeReviews	Gene locus Acid_7164 in contig CP000473_GR.
KEGG	sus:Acid_7164.
NMPDR	fig|234267.9.peg.6792.
PATRIC	32017056. VBICanSol30224_7477.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	NOG45022.
OMA	ATESNAY.
ProtClustDB	CLSK779124.
Family and domain databases
InterPro	IPR008397. Alginate_lyase_dom. IPR008929. Chondroitin_lyas. IPR012480. Hepar_II_III. [Graphical view]
Gene3D	G3DSA:1.50.10.110. Alginate_lyase. 1 hit.
Pfam	PF05426. Alginate_lyase. 1 hit. PF07940. Hepar_II_III. 1 hit. [Graphical view]
SUPFAM	SSF48230. Chondroitin_lyas. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q01QJ5_SOLUE

Accession

Primary (citable) accession number: Q01QJ5

Entry history

Integrated into UniProtKB/TrEMBL:	November 14, 2006
Last sequence update:	November 14, 2006
Last modified:	December 14, 2011
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)