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Protein
Submitted name:

RNA polymerase, sigma-24 subunit, ECF subfamily

Gene

Acid_3603

Organism
Solibacter usitatus (strain Ellin6076)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. sigma factor activity Source: UniProtKB-KW

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotation

Enzyme and pathway databases

BioCyciSUSI234267:GHSK-3634-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase, sigma-24 subunit, ECF subfamilyImported
Gene namesi
Ordered Locus Names:Acid_3603Imported
OrganismiSolibacter usitatus (strain Ellin6076)Imported
Taxonomic identifieri234267 [NCBI]
Taxonomic lineageiBacteriaAcidobacteriaSolibacteresSolibacteralesSolibacteraceaeCandidatus Solibacter
ProteomesiUP000000671: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi234267.Acid_3603.

Structurei

3D structure databases

ProteinModelPortaliQ01N77.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1595.
HOGENOMiHOG000220478.
KOiK03088.
OMAiMMALERL.
OrthoDBiEOG6WT8FT.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.

Sequencei

Sequence statusi: Complete.

Q01N77-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNPAASFEP YRRRLLGLAY RMLGSMADGE DAVQETYLRW HAADRGKVSD
60 70 80 90 100
PRAFLMTTTA RICLDMLTSA RARREEYVGP WLPEPVVDTA TLAPDSRTEL
110 120 130 140 150
AEDLSIALLL TLDRLSPLER AAFLLHDVFD FSFTEVAATL ERSEAACRQL
160 170 180 190 200
AARARSHVRE IRPRGAVAAP PRSAEIDARH EQLMLAFVAA TRSGDLNALT
210 220 230 240 250
NLLAGDVRIV TDGGGKVAAA LNVLEGADRA ARFLVGATRK GWRDDFTLRF
260 270 280 290
ATINGLPGVI LDGPEGPVQT TAFQIEDAVI RALYVVRNPD KLRHLSAG
Length:298
Mass (Da):32,562
Last modified:November 14, 2006 - v1
Checksum:i1DC19FCC917FC893
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000473 Genomic DNA. Translation: ABJ84575.1.
RefSeqiYP_824860.1. NC_008536.1.

Genome annotation databases

EnsemblBacteriaiABJ84575; ABJ84575; Acid_3603.
GeneIDi4428209.
KEGGisus:Acid_3603.
PATRICi32009604. VBICanSol30224_3770.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000473 Genomic DNA. Translation: ABJ84575.1.
RefSeqiYP_824860.1. NC_008536.1.

3D structure databases

ProteinModelPortaliQ01N77.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi234267.Acid_3603.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABJ84575; ABJ84575; Acid_3603.
GeneIDi4428209.
KEGGisus:Acid_3603.
PATRICi32009604. VBICanSol30224_3770.

Phylogenomic databases

eggNOGiCOG1595.
HOGENOMiHOG000220478.
KOiK03088.
OMAiMMALERL.
OrthoDBiEOG6WT8FT.

Enzyme and pathway databases

BioCyciSUSI234267:GHSK-3634-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Ellin6076Imported.

Entry informationi

Entry nameiQ01N77_SOLUE
AccessioniPrimary (citable) accession number: Q01N77
Entry historyi
Integrated into UniProtKB/TrEMBL: November 14, 2006
Last sequence update: November 14, 2006
Last modified: March 4, 2015
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.