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Q01N77

- Q01N77_SOLUE

UniProt

Q01N77 - Q01N77_SOLUE

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Protein
Submitted name: RNA polymerase, sigma-24 subunit, ECF subfamily
Gene
Acid_3603
Organism
Solibacter usitatus (strain Ellin6076)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. sigma factor activity Source: UniProtKB-KW
Complete GO annotation...

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotations

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotations

Enzyme and pathway databases

BioCyciSUSI234267:GHSK-3634-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase, sigma-24 subunit, ECF subfamilyImported
Gene namesi
Ordered Locus Names:Acid_3603Imported
OrganismiSolibacter usitatus (strain Ellin6076)Imported
Taxonomic identifieri234267 [NCBI]
Taxonomic lineageiBacteriaAcidobacteriaSolibacteresSolibacteralesSolibacteraceaeCandidatus Solibacter
ProteomesiUP000000671: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi234267.Acid_3603.

Structurei

3D structure databases

ProteinModelPortaliQ01N77.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1595.
HOGENOMiHOG000220478.
KOiK03088.
OMAiRTHVREA.
OrthoDBiEOG6WT8FT.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.

Sequencei

Sequence statusi: Complete.

Q01N77-1 [UniParc]FASTAAdd to Basket

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MSNPAASFEP YRRRLLGLAY RMLGSMADGE DAVQETYLRW HAADRGKVSD    50
PRAFLMTTTA RICLDMLTSA RARREEYVGP WLPEPVVDTA TLAPDSRTEL 100
AEDLSIALLL TLDRLSPLER AAFLLHDVFD FSFTEVAATL ERSEAACRQL 150
AARARSHVRE IRPRGAVAAP PRSAEIDARH EQLMLAFVAA TRSGDLNALT 200
NLLAGDVRIV TDGGGKVAAA LNVLEGADRA ARFLVGATRK GWRDDFTLRF 250
ATINGLPGVI LDGPEGPVQT TAFQIEDAVI RALYVVRNPD KLRHLSAG 298
Length:298
Mass (Da):32,562
Last modified:November 14, 2006 - v1
Checksum:i1DC19FCC917FC893
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000473 Genomic DNA. Translation: ABJ84575.1.
RefSeqiYP_824860.1. NC_008536.1.

Genome annotation databases

EnsemblBacteriaiABJ84575; ABJ84575; Acid_3603.
GeneIDi4428209.
KEGGisus:Acid_3603.
PATRICi32009604. VBICanSol30224_3770.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000473 Genomic DNA. Translation: ABJ84575.1 .
RefSeqi YP_824860.1. NC_008536.1.

3D structure databases

ProteinModelPortali Q01N77.
ModBasei Search...

Protein-protein interaction databases

STRINGi 234267.Acid_3603.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABJ84575 ; ABJ84575 ; Acid_3603 .
GeneIDi 4428209.
KEGGi sus:Acid_3603.
PATRICi 32009604. VBICanSol30224_3770.

Phylogenomic databases

eggNOGi COG1595.
HOGENOMi HOG000220478.
KOi K03088.
OMAi RTHVREA.
OrthoDBi EOG6WT8FT.

Enzyme and pathway databases

BioCyci SUSI234267:GHSK-3634-MONOMER.

Family and domain databases

Gene3Di 1.10.10.10. 1 hit.
InterProi IPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view ]
SUPFAMi SSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsi TIGR02937. sigma70-ECF. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Ellin6076.

Entry informationi

Entry nameiQ01N77_SOLUE
AccessioniPrimary (citable) accession number: Q01N77
Entry historyi
Integrated into UniProtKB/TrEMBL: November 14, 2006
Last sequence update: November 14, 2006
Last modified: May 14, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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