Q01N77 (Q01N77_SOLUE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
RNA polymerase, sigma-24 subunit, ECF subfamily EMBL ABJ84575.1

Gene names

Ordered Locus Names:

Acid_3603

Organism

Solibacter usitatus (strain Ellin6076) [Complete proteome] [HAMAP] EMBL ABJ84575.1

Taxonomic identifier

234267 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Fibrobacteres/Acidobacteria group › Acidobacteria › Solibacteres › Solibacterales › Solibacteraceae › Candidatus Solibacter › Solibacter usitatus

Protein attributes

Sequence length	298 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding SAAS SAAS007627
Molecular function	Sigma factor SAAS SAAS007627
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q01N77 [UniParc]. Last modified November 14, 2006. Version 1. Checksum: 1DC19FCC917FC893	FASTA	298	32,562
	10 20 30 40 50 60 MSNPAASFEP YRRRLLGLAY RMLGSMADGE DAVQETYLRW HAADRGKVSD PRAFLMTTTA 70 80 90 100 110 120 RICLDMLTSA RARREEYVGP WLPEPVVDTA TLAPDSRTEL AEDLSIALLL TLDRLSPLER 130 140 150 160 170 180 AAFLLHDVFD FSFTEVAATL ERSEAACRQL AARARSHVRE IRPRGAVAAP PRSAEIDARH 190 200 210 220 230 240 EQLMLAFVAA TRSGDLNALT NLLAGDVRIV TDGGGKVAAA LNVLEGADRA ARFLVGATRK 250 260 270 280 290 GWRDDFTLRF ATINGLPGVI LDGPEGPVQT TAFQIEDAVI RALYVVRNPD KLRHLSAG

References

[1]

"Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils." Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M. , DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. Appl. Environ. Microbiol. 75:2046-2056(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Ellin6076.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000473 Genomic DNA. Translation: ABJ84575.1.
RefSeq	YP_824860.1. NC_008536.1.
3D structure databases
ProteinModelPortal	Q01N77.
ModBase	Search...
Protein-protein interaction databases
STRING	234267.Acid_3603.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABJ84575; ABJ84575; Acid_3603.
GeneID	4428209.
KEGG	sus:Acid_3603.
PATRIC	32009604. VBICanSol30224_3770.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1595.
HOGENOM	HOG000220478.
KO	K03088.
OMA	VIRALYV.
ProtClustDB	CLSK2319335.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR014284. RNA_pol_sigma-70_dom. IPR007627. RNA_pol_sigma70_r2. IPR013249. RNA_pol_sigma70_r4_t2. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF04542. Sigma70_r2. 1 hit. PF08281. Sigma70_r4_2. 1 hit. [Graphical view]
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 1 hit.
TIGRFAMs	TIGR02937. sigma70-ECF. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q01N77_SOLUE

Accession

Primary (citable) accession number: Q01N77

Entry history

Integrated into UniProtKB/TrEMBL:	November 14, 2006
Last sequence update:	November 14, 2006
Last modified:	May 1, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)