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Protein
Submitted name:

RNA polymerase, sigma-24 subunit, ECF subfamily

Gene

Acid_3603

Organism
Solibacter usitatus (strain Ellin6076)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingSAAS annotation, Sigma factorSAAS annotation
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase, sigma-24 subunit, ECF subfamilyImported
Gene namesi
Ordered Locus Names:Acid_3603Imported
OrganismiSolibacter usitatus (strain Ellin6076)Imported
Taxonomic identifieri234267 [NCBI]
Taxonomic lineageiBacteriaAcidobacteriaSolibacteresSolibacteralesSolibacteraceaeCandidatus Solibacter
Proteomesi
  • UP000000671 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi234267.Acid_3603

Structurei

3D structure databases

ProteinModelPortaliQ01N77
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 71Sigma70_r2InterPro annotationAdd BLAST64
Domaini107 – 157Sigma70_r4_2InterPro annotationAdd BLAST51

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105DGB Bacteria
COG1595 LUCA
HOGENOMiHOG000220478
KOiK03088
OMAiMMALERL
OrthoDBiPOG091H0AKH

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR032710 NTF2-like_dom_sf
IPR014284 RNA_pol_sigma-70_dom
IPR007627 RNA_pol_sigma70_r2
IPR013249 RNA_pol_sigma70_r4_t2
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR036388 WH-like_DNA-bd_sf
PfamiView protein in Pfam
PF04542 Sigma70_r2, 1 hit
PF08281 Sigma70_r4_2, 1 hit
SUPFAMiSSF54427 SSF54427, 1 hit
SSF88659 SSF88659, 1 hit
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02937 sigma70-ECF, 1 hit

Sequencei

Sequence statusi: Complete.

Q01N77-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNPAASFEP YRRRLLGLAY RMLGSMADGE DAVQETYLRW HAADRGKVSD
60 70 80 90 100
PRAFLMTTTA RICLDMLTSA RARREEYVGP WLPEPVVDTA TLAPDSRTEL
110 120 130 140 150
AEDLSIALLL TLDRLSPLER AAFLLHDVFD FSFTEVAATL ERSEAACRQL
160 170 180 190 200
AARARSHVRE IRPRGAVAAP PRSAEIDARH EQLMLAFVAA TRSGDLNALT
210 220 230 240 250
NLLAGDVRIV TDGGGKVAAA LNVLEGADRA ARFLVGATRK GWRDDFTLRF
260 270 280 290
ATINGLPGVI LDGPEGPVQT TAFQIEDAVI RALYVVRNPD KLRHLSAG
Length:298
Mass (Da):32,562
Last modified:November 14, 2006 - v1
Checksum:i1DC19FCC917FC893
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000473 Genomic DNA Translation: ABJ84575.1

Genome annotation databases

EnsemblBacteriaiABJ84575; ABJ84575; Acid_3603
KEGGisus:Acid_3603

Similar proteinsi

Entry informationi

Entry nameiQ01N77_SOLUE
AccessioniPrimary (citable) accession number: Q01N77
Entry historyiIntegrated into UniProtKB/TrEMBL: November 14, 2006
Last sequence update: November 14, 2006
Last modified: April 25, 2018
This is version 75 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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