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Protein

Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core

Gene

apcC

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer (By similarity).By similarity

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Photosynthesis

Names & Taxonomyi

Protein namesi
Recommended name:
Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core
Alternative name(s):
LC 7.8
Gene namesi
Name:apcC
Ordered Locus Names:ssr3383
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
Proteomesi
  • UP000001425 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane, Phycobilisome, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 6767Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, corePRO_0000199240Add
BLAST

Interactioni

Protein-protein interaction databases

IntActiQ01950. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliQ01950.
SMRiQ01950. Positions 2-67.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 5656CpcD-likePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 cpcD-like domain.PROSITE-ProRule annotation

Phylogenomic databases

HOGENOMiHOG000246920.
InParanoidiQ01950.
KOiK02094.
OMAiVTACIPS.

Family and domain databases

Gene3Di3.30.1490.170. 1 hit.
InterProiIPR011134. Allophyco_linker.
IPR011064. Allophyco_linker_chain.
IPR008213. CpcD-like_dom.
[Graphical view]
PfamiPF01383. CpcD. 1 hit.
[Graphical view]
PIRSFiPIRSF000083. Allophyco_linker. 1 hit.
SMARTiSM01094. CpcD. 1 hit.
[Graphical view]
SUPFAMiSSF54580. SSF54580. 1 hit.
PROSITEiPS51441. CPCD_LIKE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q01950-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRMFRITACV PSQTRIRTQR ELQNTYFTKL VPYDNSFREQ QRIMKMGGKI
60
VKVELATGRP GTNAGLA
Length:67
Mass (Da):7,706
Last modified:April 1, 1993 - v1
Checksum:i39BE0BB8B6457F79
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M77135 Genomic DNA. Translation: AAA27278.1.
BA000022 Genomic DNA. Translation: BAA17876.1.

Genome annotation databases

EnsemblBacteriaiBAA17876; BAA17876; BAA17876.
KEGGisyn:ssr3383.
PATRICi23839715. VBISynSp132158_1419.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M77135 Genomic DNA. Translation: AAA27278.1.
BA000022 Genomic DNA. Translation: BAA17876.1.

3D structure databases

ProteinModelPortaliQ01950.
SMRiQ01950. Positions 2-67.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ01950. 1 interaction.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA17876; BAA17876; BAA17876.
KEGGisyn:ssr3383.
PATRICi23839715. VBISynSp132158_1419.

Phylogenomic databases

HOGENOMiHOG000246920.
InParanoidiQ01950.
KOiK02094.
OMAiVTACIPS.

Family and domain databases

Gene3Di3.30.1490.170. 1 hit.
InterProiIPR011134. Allophyco_linker.
IPR011064. Allophyco_linker_chain.
IPR008213. CpcD-like_dom.
[Graphical view]
PfamiPF01383. CpcD. 1 hit.
[Graphical view]
PIRSFiPIRSF000083. Allophyco_linker. 1 hit.
SMARTiSM01094. CpcD. 1 hit.
[Graphical view]
SUPFAMiSSF54580. SSF54580. 1 hit.
PROSITEiPS51441. CPCD_LIKE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPYC1_SYNY3
AccessioniPrimary (citable) accession number: Q01950
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1993
Last sequence update: April 1, 1993
Last modified: September 7, 2016
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.