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Q01502 (Q01502_PLAFA) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Thrombospondin-related adhesive protein EMBL AAQ11893.1
Gene names
Name:TRAP EMBL AAA29770.1
OrganismPlasmodium falciparum EMBL AAA29770.1
Taxonomic identifier5833 [NCBI]
Taxonomic lineageEukaryotaAlveolataApicomplexaAconoidasidaHaemosporidaPlasmodiumPlasmodium (Laverania)

Protein attributes

Sequence length559 AA.
Sequence statusFragment.
Protein existenceEvidence at protein level

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding561Magnesium PDB 4F1J
Metal binding581Magnesium PDB 4F1J
Metal binding1621Magnesium PDB 4F1J
Binding site611Sulfate 1 PDB 4F1J PDB 4F1K
Binding site1021Sulfate 2 PDB 4F1J PDB 4F1K
Binding site1061Sulfate 2; via amide nitrogen PDB 4F1J PDB 4F1K
Binding site1341Chloride PDB 4F1J PDB 4F1K
Binding site1411Sulfate 3 PDB 4F1J PDB 4F1K
Binding site1671Chloride; via amide nitrogen PDB 4F1J PDB 4F1K
Binding site1811Sulfate 3 PDB 4F1J PDB 4F1K
Binding site2201Sulfate 4; via amide nitrogen PDB 4F1J

Experimental info

Non-terminal residue5591 EMBL AAA29770.1

Sequences

Sequence LengthMass (Da)Tools
Q01502 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: C6DCFBB446921107

FASTA55963,357
        10         20         30         40         50         60 
MNHLGNVKYL VIVFLIFFDL FLVNGRDVQN NIVDEIKYRE EVCNDEVDLY LLMDCSGSIR 

        70         80         90        100        110        120 
RHNWVKHAVP LAMKLIQQLN LNENAIHLYA NIFSNNAKEI IRLHSDASKN KEKALIIIKS 

       130        140        150        160        170        180 
LLSTNLPYGR TNLSDALLQV RKHLNDRINR ENANQLVVIL TDGIPDSIQD SLKESRKLND 

       190        200        210        220        230        240 
RGVKIAVFGI GQGINVAFNR FLVGCHPSDG KCNLYADSAW ENVKNVIGPF MKAVCVEVEK 

       250        260        270        280        290        300 
TASCGVWDEW SPCSVTCGKG TRSRKREILH EGCTSELQEQ CEEERCPPKW EPLDVPQEPE 

       310        320        330        340        350        360 
DDQPRPRGDN FAVEKPEENI IDNNPQEPSP NPEEGKGENP NGFDLDENPE NPPNPDIPEQ 

       370        380        390        400        410        420 
EPNIPEDSEK EVPSDVPKNP EDDREENFDI PKKPENKHDN QNNLPNDKSD RYIPYSPLPP 

       430        440        450        460        470        480 
KVLDNERKQS DPQSQDNNGN RHVPNSEDRE TRPHGRNNEN RSYNRKYNDT PKYPEREEHE 

       490        500        510        520        530        540 
KPDNNKKKGG SDNKYKIAGG IAGGLALLAC AGLAYKFVVP GAATPFAGEP APFDETLGEE 

       550 
DKDLDEPEQF RLPEENEWN 

« Hide

References

[1]"Polymorphism of the TRAP gene of Plasmodium falciparum."
Robson K.J., Hall J.R., Davies L.C., Crisanti A., Hill A.V., Wellems T.E.
Proc. R. Soc. B 242:205-216(1990) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Dd2 EMBL AAA29770.1.
[2]"Polymorphisms within T-cell epitopes of pre-erythrocytic stage antigens of Plasmodium falciparum isolates."
Singh B.
Submitted (SEP-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: LUN01 EMBL AAQ11893.1.
[3]"Structure of Plasmodium falciparum TRAP (thrombospondin-related anonymous protein) A domain highlights distinct features in apicomplexan von Willebrand factor A homologues."
Pihlajamaa T., Kajander T., Knuuti J., Horkka K., Sharma A., Permi P.
Biochem. J. 450:469-476(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.73 ANGSTROMS) OF 41-242 IN COMPLEX WITH CHLORIDE; MAGNESIUM AND SULFATE.
[4]"Diversifying Selection on the Thrombospondin-Related Adhesive Protein (TRAP) Gene of Plasmodium falciparum in Thailand."
Ohashi J., Suzuki Y., Naka I., Hananantachai H., Patarapotikul J.
PLoS ONE 9:e90522-e90522(2014) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: YS013 EMBL BAO53694.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
M96805 Genomic DNA. Translation: AAA29770.1.
AF544211 Genomic DNA. Translation: AAQ11893.1.
AB807840 Genomic DNA. Translation: BAO53694.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4F1JX-ray1.73A/B41-242[»]
4F1KX-ray1.87A/B41-242[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D3.40.50.410. 1 hit.
InterProIPR000884. Thrombospondin_1_rpt.
IPR002035. VWF_A.
[Graphical view]
PfamPF00090. TSP_1. 1 hit.
PF00092. VWA. 1 hit.
[Graphical view]
SMARTSM00209. TSP1. 1 hit.
SM00327. VWA. 1 hit.
[Graphical view]
SUPFAMSSF53300. SSF53300. 1 hit.
SSF82895. SSF82895. 1 hit.
PROSITEPS50092. TSP1. 1 hit.
PS50234. VWFA. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ01502_PLAFA
AccessionPrimary (citable) accession number: Q01502
Entry history
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: June 11, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)