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Q01413

- E13B_SOLLC

UniProt

Q01413 - E13B_SOLLC

Protein

Glucan endo-1,3-beta-glucosidase B

Gene
N/A
Organism
Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 82 (01 Oct 2014)
      Sequence version 1 (01 Feb 1994)
      Previous versions | rss
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    Functioni

    Implicated in the defense of plants against pathogens.

    Catalytic activityi

    Hydrolysis of (1->3)-beta-D-glucosidic linkages in (1->3)-beta-D-glucans.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei265 – 2651NucleophileBy similarity
    Active sitei321 – 3211Proton donorBy similarity

    GO - Molecular functioni

    1. glucan endo-1,3-beta-D-glucosidase activity Source: UniProtKB-EC

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro
    2. defense response to fungus, incompatible interaction Source: EnsemblPlants/Gramene
    3. defense response to nematode Source: EnsemblPlants/Gramene
    4. response to salt stress Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Keywords - Biological processi

    Plant defense

    Protein family/group databases

    CAZyiGH17. Glycoside Hydrolase Family 17.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Glucan endo-1,3-beta-glucosidase B (EC:3.2.1.39)
    Alternative name(s):
    (1->3)-beta-glucan endohydrolase B
    Short name:
    (1->3)-beta-glucanase B
    Basic beta-1,3-glucanase
    Beta-1,3-endoglucanase B
    OrganismiSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
    Taxonomic identifieri4081 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeSolanoideaeSolaneaeSolanumLycopersicon
    ProteomesiUP000004994: Chromosome 1

    Subcellular locationi

    Vacuole Curated

    GO - Cellular componenti

    1. cell wall Source: EnsemblPlants/Gramene
    2. vacuolar membrane Source: EnsemblPlants/Gramene

    Keywords - Cellular componenti

    Vacuole

    Pathology & Biotechi

    Protein family/group databases

    Allergomei2549. Sola l Glucanase.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2525By similarityAdd
    BLAST
    Chaini26 – 340315Glucan endo-1,3-beta-glucosidase BPRO_0000011852Add
    BLAST
    Propeptidei341 – 36020Removed in mature formCuratedPRO_0000011853Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei26 – 261Pyrrolidone carboxylic acidCurated
    Glycosylationi350 – 3501N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Glycoprotein, Pyrrolidone carboxylic acid

    Expressioni

    Developmental stagei

    Maximum expression found during days 4 to 6 and days 4 to 14 after inoculation with an avirulent and a virulent pathogen respectively.

    Inductioni

    Upon infection by virulent and avirulent races of pathogens, for example fungal pathogen C.fulvum.

    Structurei

    3D structure databases

    ProteinModelPortaliQ01413.
    SMRiQ01413. Positions 27-339.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 17 family.Curated

    Keywords - Domaini

    Signal

    Phylogenomic databases

    OMAiFGATHEN.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR000490. Glyco_hydro_17.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PfamiPF00332. Glyco_hydro_17. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 1 hit.
    PROSITEiPS00587. GLYCOSYL_HYDROL_F17. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q01413-1 [UniParc]FASTAAdd to Basket

    « Hide

    MATSQIAIIV LLGLLVATNI HITEAQIGVC YGMMGNNLPS HSEVIQLYKS    50
    RNIRRLRLYD PNHGALNALR GSNIEVILGL PNVDVKHISS GMEHARWWVQ 100
    KNVRDFWPHV KIKYIAVGNE ISPVTGTSNL APFQVPALVN IYKAIGEAGL 150
    GNDIKVSTSV DMTLIGNSYP PSQGSFRNDV RWFTDPIVGF LRDTRAPLLV 200
    NIYPYFSYSG NPGQISLPYA LFTAPNVVVQ DGSRQYRNLF DAMLDSVYAA 250
    MDRTGGGSVG IVVSESGWPS AGAFGATHEN AQTYLRNLIQ HAKEGSPRKP 300
    GPIETYIFAM FDENNKNPEL EKHFGMFSPN KQPKYNLNFG VSERVWDITN 350
    STASSLTSEI 360
    Length:360
    Mass (Da):39,719
    Last modified:February 1, 1994 - v1
    Checksum:iEB29C1AB76347EE1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M80608 mRNA. Translation: AAA03618.1.
    PIRiS26241.
    RefSeqiNP_001234805.1. NM_001247876.1.
    XP_004229005.1. XM_004228957.1.
    UniGeneiLes.8987.

    Genome annotation databases

    EnsemblPlantsiSolyc01g059980.2.1; Solyc01g059980.2.1; Solyc01g059980.2.
    Solyc01g060020.2.1; Solyc01g060020.2.1; Solyc01g060020.2.
    GeneIDi101261650.
    543987.
    KEGGisly:101261650.
    sly:543987.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M80608 mRNA. Translation: AAA03618.1 .
    PIRi S26241.
    RefSeqi NP_001234805.1. NM_001247876.1.
    XP_004229005.1. XM_004228957.1.
    UniGenei Les.8987.

    3D structure databases

    ProteinModelPortali Q01413.
    SMRi Q01413. Positions 27-339.
    ModBasei Search...
    MobiDBi Search...

    Protein family/group databases

    Allergomei 2549. Sola l Glucanase.
    CAZyi GH17. Glycoside Hydrolase Family 17.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi Solyc01g059980.2.1 ; Solyc01g059980.2.1 ; Solyc01g059980.2 .
    Solyc01g060020.2.1 ; Solyc01g060020.2.1 ; Solyc01g060020.2 .
    GeneIDi 101261650.
    543987.
    KEGGi sly:101261650.
    sly:543987.

    Phylogenomic databases

    OMAi FGATHEN.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR000490. Glyco_hydro_17.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    Pfami PF00332. Glyco_hydro_17. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 1 hit.
    PROSITEi PS00587. GLYCOSYL_HYDROL_F17. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Differential accumulation of mRNAs encoding extracellular and intracellular PR proteins in tomato induced by virulent and avirulent races of Cladosporium fulvum."
      van Kan J.A.L., Joosten M.H.A.J., Wagemakers C.A.M., van den Berg-Velthuis G.C.M., de Wit P.J.G.M.
      Plant Mol. Biol. 20:513-527(1992) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
      Strain: cv. Moneymaker.
      Tissue: Leaf.

    Entry informationi

    Entry nameiE13B_SOLLC
    AccessioniPrimary (citable) accession number: Q01413
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 1, 1994
    Last sequence update: February 1, 1994
    Last modified: October 1, 2014
    This is version 82 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3