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Protein

Yop proteins translocation protein D

Gene

yscD

Organism
Yersinia enterocolitica
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Required for the export process of the Yop proteins.

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Virulence

Names & Taxonomyi

Protein namesi
Recommended name:
Yop proteins translocation protein D
Gene namesi
Name:yscD
Encoded oniPlasmid pYV0 Publication
OrganismiYersinia enterocolitica
Taxonomic identifieri630 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei122 – 14221HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 418418Yop proteins translocation protein DPRO_0000066479Add
BLAST

Expressioni

Inductioni

At 37 degrees Celsius in the absence of calcium.

Interactioni

Protein-protein interaction databases

IntActiQ01245. 2 interactions.
MINTiMINT-7943152.

Structurei

Secondary structure

1
418
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi155 – 16410Combined sources
Helixi167 – 1693Combined sources
Beta strandi172 – 1754Combined sources
Beta strandi183 – 1919Combined sources
Helixi192 – 20413Combined sources
Beta strandi209 – 2157Combined sources
Helixi216 – 22914Combined sources
Beta strandi234 – 2396Combined sources
Beta strandi245 – 2528Combined sources
Helixi254 – 2574Combined sources
Helixi261 – 2688Combined sources
Beta strandi274 – 2774Combined sources
Helixi285 – 29511Combined sources
Turni299 – 3013Combined sources
Beta strandi303 – 3075Combined sources
Beta strandi310 – 3156Combined sources
Helixi319 – 33618Combined sources
Beta strandi339 – 3468Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4ALZX-ray1.40A150-347[»]
ProteinModelPortaliQ01245.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Family and domain databases

Gene3Di2.60.200.20. 1 hit.
InterProiIPR000253. FHA_dom.
IPR008984. SMAD_FHA_domain.
IPR012843. T3SS_YscD/HrpQ.
[Graphical view]
SUPFAMiSSF49879. SSF49879. 1 hit.
TIGRFAMsiTIGR02500. type_III_yscD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q01245-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSWVCRFYQG KHRGVEVELP HGRCVFGSDP LQSDIVLSDS EIAPVHLVLM
60 70 80 90 100
VDEEGIRLTD SAEPLLQEGL PVPLGTLLRA GTCLEVGFLL WTFVAVGQPL
110 120 130 140 150
PETLQVPTQR KEPTDRLPRS RLGVGLGVLS LLLLLTFLGM LGHGLWREYN
160 170 180 190 200
QDGQLVEQEV RRLLATAAYK DVVLTSPKEG EPWLLTGYIQ DNHARLSLQN
210 220 230 240 250
FLESHGIPFR LELRSMEELR QGAEFILQRL GYHGIEVSLA PQAGWLQLNG
260 270 280 290 300
EVSEEIQKQK IDSLLQAEVP GLLGVENKVR IAGNQRKRLD ALLEQFGLDS
310 320 330 340 350
DFTVNVKGEL IELRGQVNDE KLSSFNQLQQ TFRQEFGNRP KLELVNVGGQ
360 370 380 390 400
PQHDELNFEV QAISLGKVPY VVLDNHQRYP EGAILNNGVR ILAIRRDAVI
410
VSKGKREFVI QLNGGKPR
Length:418
Mass (Da):46,811
Last modified:April 1, 1993 - v1
Checksum:iBEA3CF6C59E73BF2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M74011 Genomic DNA. Translation: AAC37021.1.
PIRiD40361.
RefSeqiWP_010891226.1. NZ_KN150737.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M74011 Genomic DNA. Translation: AAC37021.1.
PIRiD40361.
RefSeqiWP_010891226.1. NZ_KN150737.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4ALZX-ray1.40A150-347[»]
ProteinModelPortaliQ01245.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ01245. 2 interactions.
MINTiMINT-7943152.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di2.60.200.20. 1 hit.
InterProiIPR000253. FHA_dom.
IPR008984. SMAD_FHA_domain.
IPR012843. T3SS_YscD/HrpQ.
[Graphical view]
SUPFAMiSSF49879. SSF49879. 1 hit.
TIGRFAMsiTIGR02500. type_III_yscD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Analysis of virC, an operon involved in the secretion of Yop proteins by Yersinia enterocolitica."
    Michiels T., Vanooteghem J.-C., de Rouvroit C., China B., Gustin A., Boudry P., Cornelis G.R.
    J. Bacteriol. 173:4994-5009(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 439-80 / Serotype O:9.

Entry informationi

Entry nameiYSCD_YEREN
AccessioniPrimary (citable) accession number: Q01245
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1993
Last sequence update: April 1, 1993
Last modified: January 7, 2015
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Plasmid

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.