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Q01245 (YSCD_YEREN) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 75. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Yop proteins translocation protein D
Gene names
Name:yscD
Encoded onPlasmid pYV
OrganismYersinia enterocolitica
Taxonomic identifier630 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia

Protein attributes

Sequence length418 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Required for the export process of the Yop proteins.

Subcellular location

Cell inner membrane; Single-pass type II membrane protein Potential.

Induction

At 37 degrees Celsius in the absence of calcium.

Ontologies

Keywords
   Biological processVirulence
   Cellular componentCell inner membrane
Cell membrane
Membrane
   DomainTransmembrane
Transmembrane helix
   Technical term3D-structure
Plasmid
Gene Ontology (GO)
   Biological_processpathogenesis

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentintegral component of membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 418418Yop proteins translocation protein D
PRO_0000066479

Regions

Transmembrane122 – 14221Helical; Potential

Secondary structure

................................... 418
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q01245 [UniParc].

Last modified April 1, 1993. Version 1.
Checksum: BEA3CF6C59E73BF2

FASTA41846,811
        10         20         30         40         50         60 
MSWVCRFYQG KHRGVEVELP HGRCVFGSDP LQSDIVLSDS EIAPVHLVLM VDEEGIRLTD 

        70         80         90        100        110        120 
SAEPLLQEGL PVPLGTLLRA GTCLEVGFLL WTFVAVGQPL PETLQVPTQR KEPTDRLPRS 

       130        140        150        160        170        180 
RLGVGLGVLS LLLLLTFLGM LGHGLWREYN QDGQLVEQEV RRLLATAAYK DVVLTSPKEG 

       190        200        210        220        230        240 
EPWLLTGYIQ DNHARLSLQN FLESHGIPFR LELRSMEELR QGAEFILQRL GYHGIEVSLA 

       250        260        270        280        290        300 
PQAGWLQLNG EVSEEIQKQK IDSLLQAEVP GLLGVENKVR IAGNQRKRLD ALLEQFGLDS 

       310        320        330        340        350        360 
DFTVNVKGEL IELRGQVNDE KLSSFNQLQQ TFRQEFGNRP KLELVNVGGQ PQHDELNFEV 

       370        380        390        400        410 
QAISLGKVPY VVLDNHQRYP EGAILNNGVR ILAIRRDAVI VSKGKREFVI QLNGGKPR 

« Hide

References

[1]"Analysis of virC, an operon involved in the secretion of Yop proteins by Yersinia enterocolitica."
Michiels T., Vanooteghem J.-C., de Rouvroit C., China B., Gustin A., Boudry P., Cornelis G.R.
J. Bacteriol. 173:4994-5009(1991) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: 439-80 / Serotype O:9.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
M74011 Genomic DNA. Translation: AAC37021.1.
PIRD40361.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4ALZX-ray1.40A150-347[»]
ProteinModelPortalQ01245.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActQ01245. 2 interactions.
MINTMINT-7943152.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Phylogenomic databases

ProtClustDBCLSK862142.

Family and domain databases

Gene3D2.60.200.20. 1 hit.
InterProIPR000253. FHA_dom.
IPR008984. SMAD_FHA_domain.
IPR012843. T3SS_YscD/HrpQ.
[Graphical view]
SUPFAMSSF49879. SSF49879. 1 hit.
TIGRFAMsTIGR02500. type_III_yscD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameYSCD_YEREN
AccessionPrimary (citable) accession number: Q01245
Entry history
Integrated into UniProtKB/Swiss-Prot: April 1, 1993
Last sequence update: April 1, 1993
Last modified: February 19, 2014
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PDB cross-references

Index of Protein Data Bank (PDB) cross-references