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Q01245

- YSCD_YEREN

UniProt

Q01245 - YSCD_YEREN

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Protein

Yop proteins translocation protein D

Gene
yscD
Organism
Yersinia enterocolitica
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Required for the export process of the Yop proteins.

GO - Biological processi

  1. pathogenesis Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Virulence

Names & Taxonomyi

Protein namesi
Recommended name:
Yop proteins translocation protein D
Gene namesi
Name:yscD
Encoded oniPlasmid pYV0 Publication
OrganismiYersinia enterocolitica
Taxonomic identifieri630 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei122 – 14221Helical; Reviewed predictionAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 418418Yop proteins translocation protein DPRO_0000066479Add
BLAST

Expressioni

Inductioni

At 37 degrees Celsius in the absence of calcium.

Interactioni

Protein-protein interaction databases

IntActiQ01245. 2 interactions.
MINTiMINT-7943152.

Structurei

Secondary structure

1
418
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi155 – 16410
Helixi167 – 1693
Beta strandi172 – 1754
Beta strandi183 – 1919
Helixi192 – 20413
Beta strandi209 – 2157
Helixi216 – 22914
Beta strandi234 – 2396
Beta strandi245 – 2528
Helixi254 – 2574
Helixi261 – 2688
Beta strandi274 – 2774
Helixi285 – 29511
Turni299 – 3013
Beta strandi303 – 3075
Beta strandi310 – 3156
Helixi319 – 33618
Beta strandi339 – 3468

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4ALZX-ray1.40A150-347[»]
ProteinModelPortaliQ01245.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Family and domain databases

Gene3Di2.60.200.20. 1 hit.
InterProiIPR000253. FHA_dom.
IPR008984. SMAD_FHA_domain.
IPR012843. T3SS_YscD/HrpQ.
[Graphical view]
SUPFAMiSSF49879. SSF49879. 1 hit.
TIGRFAMsiTIGR02500. type_III_yscD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q01245-1 [UniParc]FASTAAdd to Basket

« Hide

MSWVCRFYQG KHRGVEVELP HGRCVFGSDP LQSDIVLSDS EIAPVHLVLM    50
VDEEGIRLTD SAEPLLQEGL PVPLGTLLRA GTCLEVGFLL WTFVAVGQPL 100
PETLQVPTQR KEPTDRLPRS RLGVGLGVLS LLLLLTFLGM LGHGLWREYN 150
QDGQLVEQEV RRLLATAAYK DVVLTSPKEG EPWLLTGYIQ DNHARLSLQN 200
FLESHGIPFR LELRSMEELR QGAEFILQRL GYHGIEVSLA PQAGWLQLNG 250
EVSEEIQKQK IDSLLQAEVP GLLGVENKVR IAGNQRKRLD ALLEQFGLDS 300
DFTVNVKGEL IELRGQVNDE KLSSFNQLQQ TFRQEFGNRP KLELVNVGGQ 350
PQHDELNFEV QAISLGKVPY VVLDNHQRYP EGAILNNGVR ILAIRRDAVI 400
VSKGKREFVI QLNGGKPR 418
Length:418
Mass (Da):46,811
Last modified:April 1, 1993 - v1
Checksum:iBEA3CF6C59E73BF2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M74011 Genomic DNA. Translation: AAC37021.1.
PIRiD40361.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M74011 Genomic DNA. Translation: AAC37021.1 .
PIRi D40361.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4ALZ X-ray 1.40 A 150-347 [» ]
ProteinModelPortali Q01245.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi Q01245. 2 interactions.
MINTi MINT-7943152.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Family and domain databases

Gene3Di 2.60.200.20. 1 hit.
InterProi IPR000253. FHA_dom.
IPR008984. SMAD_FHA_domain.
IPR012843. T3SS_YscD/HrpQ.
[Graphical view ]
SUPFAMi SSF49879. SSF49879. 1 hit.
TIGRFAMsi TIGR02500. type_III_yscD. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Analysis of virC, an operon involved in the secretion of Yop proteins by Yersinia enterocolitica."
    Michiels T., Vanooteghem J.-C., de Rouvroit C., China B., Gustin A., Boudry P., Cornelis G.R.
    J. Bacteriol. 173:4994-5009(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 439-80 / Serotype O:9.

Entry informationi

Entry nameiYSCD_YEREN
AccessioniPrimary (citable) accession number: Q01245
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1993
Last sequence update: April 1, 1993
Last modified: May 14, 2014
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Plasmid

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

External Data

Dasty 3

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