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Q01245

- YSCD_YEREN

UniProt

Q01245 - YSCD_YEREN

Protein

Yop proteins translocation protein D

Gene

yscD

Organism
Yersinia enterocolitica
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 77 (01 Oct 2014)
      Sequence version 1 (01 Apr 1993)
      Previous versions | rss
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    Functioni

    Required for the export process of the Yop proteins.

    GO - Biological processi

    1. pathogenesis Source: UniProtKB-KW

    Keywords - Biological processi

    Virulence

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Yop proteins translocation protein D
    Gene namesi
    Name:yscD
    Encoded oniPlasmid pYV0 Publication
    OrganismiYersinia enterocolitica
    Taxonomic identifieri630 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW
    2. plasma membrane Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cell inner membrane, Cell membrane, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 418418Yop proteins translocation protein DPRO_0000066479Add
    BLAST

    Expressioni

    Inductioni

    At 37 degrees Celsius in the absence of calcium.

    Interactioni

    Protein-protein interaction databases

    IntActiQ01245. 2 interactions.
    MINTiMINT-7943152.

    Structurei

    Secondary structure

    1
    418
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi155 – 16410
    Helixi167 – 1693
    Beta strandi172 – 1754
    Beta strandi183 – 1919
    Helixi192 – 20413
    Beta strandi209 – 2157
    Helixi216 – 22914
    Beta strandi234 – 2396
    Beta strandi245 – 2528
    Helixi254 – 2574
    Helixi261 – 2688
    Beta strandi274 – 2774
    Helixi285 – 29511
    Turni299 – 3013
    Beta strandi303 – 3075
    Beta strandi310 – 3156
    Helixi319 – 33618
    Beta strandi339 – 3468

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4ALZX-ray1.40A150-347[»]
    ProteinModelPortaliQ01245.
    ModBaseiSearch...
    MobiDBiSearch...

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei122 – 14221HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Family and domain databases

    Gene3Di2.60.200.20. 1 hit.
    InterProiIPR000253. FHA_dom.
    IPR008984. SMAD_FHA_domain.
    IPR012843. T3SS_YscD/HrpQ.
    [Graphical view]
    SUPFAMiSSF49879. SSF49879. 1 hit.
    TIGRFAMsiTIGR02500. type_III_yscD. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q01245-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSWVCRFYQG KHRGVEVELP HGRCVFGSDP LQSDIVLSDS EIAPVHLVLM    50
    VDEEGIRLTD SAEPLLQEGL PVPLGTLLRA GTCLEVGFLL WTFVAVGQPL 100
    PETLQVPTQR KEPTDRLPRS RLGVGLGVLS LLLLLTFLGM LGHGLWREYN 150
    QDGQLVEQEV RRLLATAAYK DVVLTSPKEG EPWLLTGYIQ DNHARLSLQN 200
    FLESHGIPFR LELRSMEELR QGAEFILQRL GYHGIEVSLA PQAGWLQLNG 250
    EVSEEIQKQK IDSLLQAEVP GLLGVENKVR IAGNQRKRLD ALLEQFGLDS 300
    DFTVNVKGEL IELRGQVNDE KLSSFNQLQQ TFRQEFGNRP KLELVNVGGQ 350
    PQHDELNFEV QAISLGKVPY VVLDNHQRYP EGAILNNGVR ILAIRRDAVI 400
    VSKGKREFVI QLNGGKPR 418
    Length:418
    Mass (Da):46,811
    Last modified:April 1, 1993 - v1
    Checksum:iBEA3CF6C59E73BF2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M74011 Genomic DNA. Translation: AAC37021.1.
    PIRiD40361.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M74011 Genomic DNA. Translation: AAC37021.1 .
    PIRi D40361.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4ALZ X-ray 1.40 A 150-347 [» ]
    ProteinModelPortali Q01245.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi Q01245. 2 interactions.
    MINTi MINT-7943152.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Family and domain databases

    Gene3Di 2.60.200.20. 1 hit.
    InterProi IPR000253. FHA_dom.
    IPR008984. SMAD_FHA_domain.
    IPR012843. T3SS_YscD/HrpQ.
    [Graphical view ]
    SUPFAMi SSF49879. SSF49879. 1 hit.
    TIGRFAMsi TIGR02500. type_III_yscD. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Analysis of virC, an operon involved in the secretion of Yop proteins by Yersinia enterocolitica."
      Michiels T., Vanooteghem J.-C., de Rouvroit C., China B., Gustin A., Boudry P., Cornelis G.R.
      J. Bacteriol. 173:4994-5009(1991) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: 439-80 / Serotype O:9.

    Entry informationi

    Entry nameiYSCD_YEREN
    AccessioniPrimary (citable) accession number: Q01245
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 1, 1993
    Last sequence update: April 1, 1993
    Last modified: October 1, 2014
    This is version 77 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Plasmid

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references

    External Data

    Dasty 3