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Protein

Yop proteins translocation protein D

Gene

yscD

Organism
Yersinia enterocolitica
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Required for the export process of the Yop proteins.

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Virulence

Names & Taxonomyi

Protein namesi
Recommended name:
Yop proteins translocation protein D
Gene namesi
Name:yscD
Encoded oniPlasmid pYV0 Publication
OrganismiYersinia enterocolitica
Taxonomic identifieri630 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesYersiniaceaeYersinia

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei122 – 142HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000664791 – 418Yop proteins translocation protein DAdd BLAST418

Expressioni

Inductioni

At 37 degrees Celsius in the absence of calcium.

Interactioni

Protein-protein interaction databases

IntActiQ01245. 2 interactors.
MINTiMINT-7943152.

Structurei

Secondary structure

1418
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi155 – 164Combined sources10
Helixi167 – 169Combined sources3
Beta strandi172 – 175Combined sources4
Beta strandi183 – 191Combined sources9
Helixi192 – 204Combined sources13
Beta strandi209 – 215Combined sources7
Helixi216 – 229Combined sources14
Beta strandi234 – 239Combined sources6
Beta strandi245 – 252Combined sources8
Helixi254 – 257Combined sources4
Helixi261 – 268Combined sources8
Beta strandi274 – 277Combined sources4
Helixi285 – 295Combined sources11
Turni299 – 301Combined sources3
Beta strandi303 – 307Combined sources5
Beta strandi310 – 315Combined sources6
Helixi319 – 336Combined sources18
Beta strandi339 – 346Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4ALZX-ray1.40A150-347[»]
ProteinModelPortaliQ01245.
SMRiQ01245.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Family and domain databases

Gene3Di2.60.200.20. 1 hit.
InterProiIPR000253. FHA_dom.
IPR008984. SMAD_FHA_domain.
IPR012843. T3SS_YscD/HrpQ.
IPR032030. YscD_cytoplasmic_dom.
IPR032034. YscD_ppl.
[Graphical view]
PfamiPF16697. Yop-YscD_cpl. 1 hit.
PF16693. Yop-YscD_ppl. 1 hit.
[Graphical view]
SUPFAMiSSF49879. SSF49879. 1 hit.
TIGRFAMsiTIGR02500. type_III_yscD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q01245-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSWVCRFYQG KHRGVEVELP HGRCVFGSDP LQSDIVLSDS EIAPVHLVLM
60 70 80 90 100
VDEEGIRLTD SAEPLLQEGL PVPLGTLLRA GTCLEVGFLL WTFVAVGQPL
110 120 130 140 150
PETLQVPTQR KEPTDRLPRS RLGVGLGVLS LLLLLTFLGM LGHGLWREYN
160 170 180 190 200
QDGQLVEQEV RRLLATAAYK DVVLTSPKEG EPWLLTGYIQ DNHARLSLQN
210 220 230 240 250
FLESHGIPFR LELRSMEELR QGAEFILQRL GYHGIEVSLA PQAGWLQLNG
260 270 280 290 300
EVSEEIQKQK IDSLLQAEVP GLLGVENKVR IAGNQRKRLD ALLEQFGLDS
310 320 330 340 350
DFTVNVKGEL IELRGQVNDE KLSSFNQLQQ TFRQEFGNRP KLELVNVGGQ
360 370 380 390 400
PQHDELNFEV QAISLGKVPY VVLDNHQRYP EGAILNNGVR ILAIRRDAVI
410
VSKGKREFVI QLNGGKPR
Length:418
Mass (Da):46,811
Last modified:April 1, 1993 - v1
Checksum:iBEA3CF6C59E73BF2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M74011 Genomic DNA. Translation: AAC37021.1.
PIRiD40361.
RefSeqiWP_010891226.1. NZ_KN150737.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M74011 Genomic DNA. Translation: AAC37021.1.
PIRiD40361.
RefSeqiWP_010891226.1. NZ_KN150737.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4ALZX-ray1.40A150-347[»]
ProteinModelPortaliQ01245.
SMRiQ01245.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ01245. 2 interactors.
MINTiMINT-7943152.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di2.60.200.20. 1 hit.
InterProiIPR000253. FHA_dom.
IPR008984. SMAD_FHA_domain.
IPR012843. T3SS_YscD/HrpQ.
IPR032030. YscD_cytoplasmic_dom.
IPR032034. YscD_ppl.
[Graphical view]
PfamiPF16697. Yop-YscD_cpl. 1 hit.
PF16693. Yop-YscD_ppl. 1 hit.
[Graphical view]
SUPFAMiSSF49879. SSF49879. 1 hit.
TIGRFAMsiTIGR02500. type_III_yscD. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYSCD_YEREN
AccessioniPrimary (citable) accession number: Q01245
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1993
Last sequence update: April 1, 1993
Last modified: November 2, 2016
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Plasmid

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.