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Protein

Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B

Gene

Pde1b

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at transcript leveli

Functioni

Cyclic nucleotide phosphodiesterase with a dual-specificity for the second messengers cAMP and cGMP, which are key regulators of many important physiological processes. Has a preference for cGMP as a substrate (By similarity).By similarity

Catalytic activityi

Nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate.

Cofactori

a divalent metal cationBy similarityNote: Binds 2 divalent metal cations per subunit. Site 1 may preferentially bind zinc ions, while site 2 has a preference for magnesium and/or manganese ions.By similarity

Enzyme regulationi

Type I PDE are activated by the binding of calmodulin in the presence of Ca2+.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei222 – 2221Proton donorBy similarity
Metal bindingi226 – 2261Divalent metal cation 1By similarity
Metal bindingi262 – 2621Divalent metal cation 1By similarity
Metal bindingi263 – 2631Divalent metal cation 1By similarity
Metal bindingi263 – 2631Divalent metal cation 2By similarity
Metal bindingi369 – 3691Divalent metal cation 1By similarity

GO - Molecular functioni

  • 3',5'-cyclic-AMP phosphodiesterase activity Source: RGD
  • calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity Source: RGD
  • cyclic-nucleotide phosphodiesterase activity Source: RGD
  • metal ion binding Source: UniProtKB-KW

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Ligandi

Calmodulin-binding, cAMP, cGMP, Metal-binding

Enzyme and pathway databases

ReactomeiREACT_287445. G alpha (s) signalling events.
REACT_313751. Cam-PDE 1 activation.
REACT_349609. cGMP effects.

Names & Taxonomyi

Protein namesi
Recommended name:
Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B (EC:3.1.4.17)
Short name:
Cam-PDE 1B
Alternative name(s):
63 kDa Cam-PDE
Gene namesi
Name:Pde1b
Synonyms:Pde1b1
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494 Componenti: Chromosome 7

Organism-specific databases

RGDi3278. Pde1b.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: UniProtKB-SubCell
  • neuronal cell body Source: RGD
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 535535Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1BPRO_0000198791Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei465 – 4651PhosphoserineBy similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ01066.
PRIDEiQ01066.

Expressioni

Gene expression databases

ExpressionAtlasiQ01066. baseline.
GenevestigatoriQ01066.

Interactioni

Subunit structurei

Homodimer.

Structurei

3D structure databases

ProteinModelPortaliQ01066.
SMRiQ01066. Positions 145-501.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni27 – 4721Calmodulin-bindingSequence AnalysisAdd
BLAST
Regioni196 – 495300CatalyticBy similarityAdd
BLAST

Sequence similaritiesi

Phylogenomic databases

eggNOGiNOG139098.
GeneTreeiENSGT00760000118889.
HOGENOMiHOG000231888.
HOVERGENiHBG056120.
InParanoidiQ01066.
KOiK13755.
OMAiTAVHNCL.
OrthoDBiEOG7X9G6J.
PhylomeDBiQ01066.
TreeFamiTF314638.

Family and domain databases

Gene3Di1.10.1300.10. 2 hits.
InterProiIPR003607. HD/PDEase_dom.
IPR023088. PDEase.
IPR002073. PDEase_catalytic_dom.
IPR023174. PDEase_CS.
IPR013706. PDEase_N.
[Graphical view]
PfamiPF00233. PDEase_I. 1 hit.
PF08499. PDEase_I_N. 1 hit.
[Graphical view]
PRINTSiPR00387. PDIESTERASE1.
SMARTiSM00471. HDc. 1 hit.
[Graphical view]
PROSITEiPS00126. PDEASE_I. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q01066-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MELSPRSPPE MLESDCPSPL ELKSAPSKKM WIKLRSLLRY MVKQLENGEV
60 70 80 90 100
NIEELKKNLE YTASLLEAVY IDETRQILDT EDELRELRSD AVPSEVRDWL
110 120 130 140 150
ASTFTQQTRA KGRRAEEKPK FRSIVHAVQA GIFVERMFRR TYTAVGPTYS
160 170 180 190 200
TAVHNCLKNL DVWCFDVFSL NRAADDHALR TIVFELLTRH SLISRFKIPT
210 220 230 240 250
VFLMSFLEAL ETGYGKYKNP YHNQIHAADV TQTVHCFLLR TGMVHCLSEI
260 270 280 290 300
EVLAIIFAAA IHDYEHTGTT NSFHIQTKSE CAILYNDRSV LENHHISSVF
310 320 330 340 350
RMMQDDEMNI FINLTKDEFV ELRALVIEMV LATDMSCHFQ QVKTMKTALQ
360 370 380 390 400
QLERIDKSKA LSLLLHAADI SHPTKQWSVH SRWTKALMEE FFRQGDKEAE
410 420 430 440 450
LGLPFSPLCD RTSTLVAQSQ IGFIDFIVEP TFSVLTDVAE KSVQPLTDDD
460 470 480 490 500
SKSKSQPSFQ WRQPSLDVDV GDPNPDVVSF RSTWTKYIQE NKQKWKERAA
510 520 530
SGITNQMSID ELSPCEEEAP SSPAEDEHNQ NGNLD
Length:535
Mass (Da):61,260
Last modified:April 1, 1993 - v1
Checksum:iF98FFFE61F848F89
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M94537 mRNA. Translation: AAA16530.1.
AF327906 mRNA. Translation: AAK15740.1.
PIRiA44161.
RefSeqiNP_073201.1. NM_022710.1.
UniGeneiRn.53489.

Genome annotation databases

EnsembliENSRNOT00000055272; ENSRNOP00000052147; ENSRNOG00000036828.
GeneIDi29691.
KEGGirno:29691.
UCSCiRGD:3278. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M94537 mRNA. Translation: AAA16530.1.
AF327906 mRNA. Translation: AAK15740.1.
PIRiA44161.
RefSeqiNP_073201.1. NM_022710.1.
UniGeneiRn.53489.

3D structure databases

ProteinModelPortaliQ01066.
SMRiQ01066. Positions 145-501.
ModBaseiSearch...
MobiDBiSearch...

Chemistry

ChEMBLiCHEMBL2111322.

Proteomic databases

PaxDbiQ01066.
PRIDEiQ01066.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000055272; ENSRNOP00000052147; ENSRNOG00000036828.
GeneIDi29691.
KEGGirno:29691.
UCSCiRGD:3278. rat.

Organism-specific databases

CTDi5153.
RGDi3278. Pde1b.

Phylogenomic databases

eggNOGiNOG139098.
GeneTreeiENSGT00760000118889.
HOGENOMiHOG000231888.
HOVERGENiHBG056120.
InParanoidiQ01066.
KOiK13755.
OMAiTAVHNCL.
OrthoDBiEOG7X9G6J.
PhylomeDBiQ01066.
TreeFamiTF314638.

Enzyme and pathway databases

ReactomeiREACT_287445. G alpha (s) signalling events.
REACT_313751. Cam-PDE 1 activation.
REACT_349609. cGMP effects.

Miscellaneous databases

NextBioi610076.
PROiQ01066.

Gene expression databases

ExpressionAtlasiQ01066. baseline.
GenevestigatoriQ01066.

Family and domain databases

Gene3Di1.10.1300.10. 2 hits.
InterProiIPR003607. HD/PDEase_dom.
IPR023088. PDEase.
IPR002073. PDEase_catalytic_dom.
IPR023174. PDEase_CS.
IPR013706. PDEase_N.
[Graphical view]
PfamiPF00233. PDEase_I. 1 hit.
PF08499. PDEase_I_N. 1 hit.
[Graphical view]
PRINTSiPR00387. PDIESTERASE1.
SMARTiSM00471. HDc. 1 hit.
[Graphical view]
PROSITEiPS00126. PDEASE_I. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "A polymerase chain reaction strategy to identify and clone cyclic nucleotide phosphodiesterase cDNAs. Molecular cloning of the cDNA encoding the 63-kDa calmodulin-dependent phosphodiesterase."
    Repaske D.R., Swinnen J.V., Jin S.-L.C., van Wyk J.J., Conti M.
    J. Biol. Chem. 267:18683-18688(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "Phosphodiesterase 1B (PDE1B) in rat brain."
    Prime G.R., Sutor B.
    Submitted (DEC-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: Wistar.

Entry informationi

Entry nameiPDE1B_RAT
AccessioniPrimary (citable) accession number: Q01066
Secondary accession number(s): Q548L3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1993
Last sequence update: April 1, 1993
Last modified: April 1, 2015
This is version 111 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.