Q01066 (PDE1B_RAT) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B
Short name=Cam-PDE 1B
EC=3.1.4.17

Alternative name(s):
63 kDa Cam-PDE

Gene names

Name:	Pde1b
Synonyms:	Pde1b1

Organism

Rattus norvegicus (Rat) [Reference proteome]

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	535 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Function	Cyclic nucleotide phosphodiesterase with a dual-specificity for the second messengers cAMP and cGMP, which are key regulators of many important physiological processes. Has a preference for cGMP as a substrate By similarity.
Catalytic activity	Nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate.
Cofactor	Binds 2 divalent metal cations per subunit. Site 1 may preferentially bind zinc ions, while site 2 has a preference for magnesium and/or manganese ions By similarity.
Enzyme regulation	Type I PDE are activated by the binding of calmodulin in the presence of Ca2+.
Subunit structure	Homodimer.
Subcellular location	Cytoplasm.
Sequence similarities	Belongs to the cyclic nucleotide phosphodiesterase family. PDE1 subfamily.

Ontologies

Keywords
Cellular component	Cytoplasm
Ligand	Calmodulin-binding Metal-binding cAMP cGMP
Molecular function	Hydrolase
PTM	Phosphoprotein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	cAMP catabolic process Inferred from direct assay PubMed 15305867PubMed 16881052. Source: RGD cGMP catabolic process Inferred from direct assay PubMed 15305867PubMed 16881052. Source: RGD cellular response to granulocyte macrophage colony-stimulating factor stimulus Inferred from electronic annotation. Source: Compara cellular response to macrophage colony-stimulating factor stimulus Inferred from electronic annotation. Source: Compara locomotory behavior Inferred from electronic annotation. Source: Compara monocyte differentiation Inferred from electronic annotation. Source: Compara regulation of dopamine metabolic process Inferred from electronic annotation. Source: Compara regulation of neurotransmitter levels Inferred from electronic annotation. Source: Compara response to amphetamine Inferred from electronic annotation. Source: Compara serotonin metabolic process Inferred from electronic annotation. Source: Compara signal transduction Inferred from electronic annotation. Source: Compara visual learning Inferred from electronic annotation. Source: Compara
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell neuronal cell body Inferred from direct assay PubMed 15305867. Source: RGD nucleus Inferred from electronic annotation. Source: Compara
Molecular_function	3',5'-cyclic-AMP phosphodiesterase activity Inferred from direct assay PubMed 15305867PubMed 16881052. Source: RGD calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity Inferred from direct assay PubMed 15305867PubMed 16881052. Source: RGD metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 535	535	Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B		PRO_0000198791
Regions
	Region	27 – 47	21	Calmodulin-binding Potential
	Region	196 – 495	300	Catalytic By similarity
Sites
	Active site	222	1	Proton donor By similarity
	Metal binding	226	1	Divalent metal cation 1 By similarity
	Metal binding	262	1	Divalent metal cation 1 By similarity
	Metal binding	263	1	Divalent metal cation 1 By similarity
	Metal binding	263	1	Divalent metal cation 2 By similarity
	Metal binding	369	1	Divalent metal cation 1 By similarity
Amino acid modifications
	Modified residue	465	1	Phosphoserine By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q01066 [UniParc]. Last modified April 1, 1993. Version 1. Checksum: F98FFFE61F848F89	FASTA	535	61,260
	10 20 30 40 50 60 MELSPRSPPE MLESDCPSPL ELKSAPSKKM WIKLRSLLRY MVKQLENGEV NIEELKKNLE 70 80 90 100 110 120 YTASLLEAVY IDETRQILDT EDELRELRSD AVPSEVRDWL ASTFTQQTRA KGRRAEEKPK 130 140 150 160 170 180 FRSIVHAVQA GIFVERMFRR TYTAVGPTYS TAVHNCLKNL DVWCFDVFSL NRAADDHALR 190 200 210 220 230 240 TIVFELLTRH SLISRFKIPT VFLMSFLEAL ETGYGKYKNP YHNQIHAADV TQTVHCFLLR 250 260 270 280 290 300 TGMVHCLSEI EVLAIIFAAA IHDYEHTGTT NSFHIQTKSE CAILYNDRSV LENHHISSVF 310 320 330 340 350 360 RMMQDDEMNI FINLTKDEFV ELRALVIEMV LATDMSCHFQ QVKTMKTALQ QLERIDKSKA 370 380 390 400 410 420 LSLLLHAADI SHPTKQWSVH SRWTKALMEE FFRQGDKEAE LGLPFSPLCD RTSTLVAQSQ 430 440 450 460 470 480 IGFIDFIVEP TFSVLTDVAE KSVQPLTDDD SKSKSQPSFQ WRQPSLDVDV GDPNPDVVSF 490 500 510 520 530 RSTWTKYIQE NKQKWKERAA SGITNQMSID ELSPCEEEAP SSPAEDEHNQ NGNLD

References

[1]	"A polymerase chain reaction strategy to identify and clone cyclic nucleotide phosphodiesterase cDNAs. Molecular cloning of the cDNA encoding the 63-kDa calmodulin-dependent phosphodiesterase." Repaske D.R., Swinnen J.V., Jin S.-L.C., van Wyk J.J., Conti M. J. Biol. Chem. 267:18683-18688(1992) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA].
[2]	"Phosphodiesterase 1B (PDE1B) in rat brain." Prime G.R., Sutor B. Submitted (DEC-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA]. Strain: Wistar.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	M94537 mRNA. Translation: AAA16530.1. AF327906 mRNA. Translation: AAK15740.1.
IPI	IPI00199077.
PIR	A44161.
RefSeq	NP_073201.1. NM_022710.1.
UniGene	Rn.53489.
3D structure databases
ProteinModelPortal	Q01066.
SMR	Q01066. Positions 145-501.
ModBase	Search...
Proteomic databases
PaxDb	Q01066.
PRIDE	Q01066.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000055272; ENSRNOP00000052147; ENSRNOG00000036828.
GeneID	29691.
KEGG	rno:29691.
UCSC	RGD:3278. rat.
Organism-specific databases
CTD	5153.
RGD	3278. Pde1b.
Phylogenomic databases
eggNOG	NOG139098.
GeneTree	ENSGT00660000095451.
HOGENOM	HOG000231888.
HOVERGEN	HBG056120.
InParanoid	Q01066.
KO	K13755.
OMA	STAVHNC.
OrthoDB	EOG4FXR79.
Gene expression databases
ArrayExpress	Q01066.
Genevestigator	Q01066.
GermOnline	ENSRNOG00000036828. Rattus norvegicus.
Family and domain databases
Gene3D	1.10.1300.10. 2 hits.
InterPro	IPR003607. HD/PDEase_dom. IPR023088. PDEase. IPR002073. PDEase_catalytic_dom. IPR023174. PDEase_CS. IPR013706. PDEase_N. [Graphical view]
Pfam	PF00233. PDEase_I. 1 hit. PF08499. PDEase_I_N. 1 hit. [Graphical view]
PRINTS	PR00387. PDIESTERASE1.
SMART	SM00471. HDc. 1 hit. [Graphical view]
PROSITE	PS00126. PDEASE_I. 1 hit. [Graphical view]
ProtoNet	Search...
Other
BindingDB	Q01066.
ChEMBL	CHEMBL3665.
NextBio	610076.

Entry information

Entry name

PDE1B_RAT

Accession

Primary (citable) accession number: Q01066
Secondary accession number(s): Q548L3

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 1, 1993
Last sequence update:	April 1, 1993
Last modified:	April 3, 2013
This is version 98 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Chordata Protein Annotation Program