Q00YY2 (Q00YY2_OSTTA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase IV (ISS) EMBL CAL55777.1

Gene names

Ordered Locus Names:

Ot11g01720 EMBL CAL55777.1

Organism

Ostreococcus tauri [Complete proteome] EMBL CAL55777.1

Taxonomic identifier

70448 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Chlorophyta › Mamiellophyceae › Mamiellales › Ostreococcus

Protein attributes

Sequence length	1111 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data. EMBL CAL55777.1

Ontologies

Keywords
Molecular function	Ligase EMBL CAL55777.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro cyclic nucleotide biosynthetic process Inferred from electronic annotation. Source: InterPro intracellular signal transduction Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro phosphorus-oxygen lyase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q00YY2 [UniParc]. Last modified November 14, 2006. Version 1. Checksum: 3B4852CD97145BAA	FASTA	1,111	126,607
	10 20 30 40 50 60 MKDAAVDDDD DDYDDDDGDI DDPSAARRER SMDASGGPRY ASARDAPFRA LARACERVQR 70 80 90 100 110 120 ERGRKKANAA RRYAALDAFH DVCLVSTRDG TRCDAFDAYR LLIPTLDKER ETYRLKHDAL 130 140 150 160 170 180 AKCVVSAFDM ARASEDAKTL EDWKQKGGGN FPQAVREVLE RGHLQGREGD ADVRELTIGE 190 200 210 220 230 240 VNDTLDELAA CESKHERAAT LRKLFGKMDA VMVKWACAII LKETKLRMGD KAIMRHYHRD 250 260 270 280 290 300 AEDLFDWTSD LRRVCEDLPR RDVRLKRADI NVGEGLINPQ LALRKNTADA IMKTLRGRQF 310 320 330 340 350 360 IIETKFDGER IQLHKDGEII NYWTRNMNDF GPRGYDVMNG LFRHLPKRCI LDGELLVWNK 370 380 390 400 410 420 LRETWHPFGA IKTLIKAANL RKSKDEVFPL SNDTDDRDDG DDIAGYDPKS SKYEWYQEYM 430 440 450 460 470 480 KKLTYGDLEL VYVPFDILYI GDESVRHLQL VERHAKLREH VHPVSAMCGN IKARILLATP 490 500 510 520 530 540 DCEFSKIGST KQDIERALLE AIEAGDEGLV IKDLNSEWIP GDRSGNWMKI KPDYCKSEDL 550 560 570 580 590 600 DVLLIGGYYG AGELRGGKIS QFLVGIIEST NDPTSAHGIK IMSFCKVGTG ISATELDDLR 610 620 630 640 650 660 NRLGDYMHRE KPREMDYNVT DAYSERPDVW IWPPQRSVVV RVKGDIRCIR SMTYATGYSL 670 680 690 700 710 720 RFPRVTGIRY DKTWSDILTN AELKQIIEED RPNIAMDMGE GHMNSRKRTR AAALTTLLPA 730 740 750 760 770 780 HLMPVDVSGV VPESEVFKSL QIHIVNCESR EQKQELFKAI IARGGRTSEM WHSDVTHSVA 790 800 810 820 830 840 ANRDGAKFIA ASHHGDVYTI DWLKQCIQQN RIVTPRPRHR LNLATSTWYG SNIMDRYGDD 850 860 870 880 890 900 HAIPCNEEDI RALLHQVGDQ AKRWETSEVP AMVELTREYP NLLKSMKYCT FSECVFEIDD 910 920 930 940 950 960 SCDVQHNEWM SESEHFRLML HEERFNVELR LRLFGGTMAP EGRSGTHIVR MNDDSVREEY 970 980 990 1000 1010 1020 LDDGRVLVSN GWVTKRTPRC DSSFLEAFVP ASAKWLSSVT SGEMCTCENR CHELDRAPLK 1030 1040 1050 1060 1070 1080 HIRQEIHGCR RLAEASASHG RLLRTVLAEY FTRLANIVSA YDGMVVAFLG DAMLAAWLVD 1090 1100 1110 CTSETDERVF DAVRHAYFSA HSILNHVHGC T

References

[1]

"Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features." Derelle E., Ferraz C., Rombauts S., Rouze P., Worden A.Z., Robbens S., Partensky F., Degroeve S., Echeynie S., Cooke R., Saeys Y., Wuyts J., Jabbari K., Bowler C., Panaud O., Piegu B., Ball S.G., Ral J.-P. , Bouget F.-Y., Piganeau G., De Baets B., Picard A., Delseny M., Demaille J., Van de Peer Y., Moreau H. Proc. Natl. Acad. Sci. U.S.A. 103:11647-11652(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: OTTH0595.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CAID01000011 Genomic DNA. Translation: CAL55777.1.
RefSeq	XP_003081974.1. XM_003081926.1.
3D structure databases
ProteinModelPortal	Q00YY2.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	9832415.
KEGG	ota:Ot11g01720.
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000265334.
KO	K10777.
OMA	CESREQK.
Family and domain databases
Gene3D	2.40.50.140. 1 hit. 3.30.70.1230. 1 hit. 3.40.50.10190. 1 hit.
InterPro	IPR001054. A/G_cyclase. IPR001357. BRCT_dom. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SMART	SM00292. BRCT. 1 hit. [Graphical view]
SUPFAM	SSF52113. BRCT. 1 hit. SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS50172. BRCT. 1 hit. PS00697. DNA_LIGASE_A1. 1 hit. PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q00YY2_OSTTA

Accession

Primary (citable) accession number: Q00YY2

Entry history

Integrated into UniProtKB/TrEMBL:	November 14, 2006
Last sequence update:	November 14, 2006
Last modified:	May 29, 2013
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)