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Q007T0

- SDHB_PIG

UniProt

Q007T0 - SDHB_PIG

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Protein

Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial

Gene

SDHB

Organism
Sus scrofa (Pig)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli

Functioni

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Catalytic activityi

Succinate + a quinone = fumarate + a quinol.

Cofactori

Binds 1 2Fe-2S cluster.
Binds 1 3Fe-4S cluster.
Binds 1 4Fe-4S cluster.

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi93 – 931Iron-sulfur 1 (2Fe-2S)
Metal bindingi98 – 981Iron-sulfur 1 (2Fe-2S)
Metal bindingi101 – 1011Iron-sulfur 1 (2Fe-2S)
Metal bindingi113 – 1131Iron-sulfur 1 (2Fe-2S)
Metal bindingi186 – 1861Iron-sulfur 2 (4Fe-4S)
Metal bindingi189 – 1891Iron-sulfur 2 (4Fe-4S)
Metal bindingi192 – 1921Iron-sulfur 2 (4Fe-4S)
Metal bindingi196 – 1961Iron-sulfur 3 (3Fe-4S)
Binding sitei201 – 2011Ubiquinone; shared with DHSD1 Publication
Metal bindingi243 – 2431Iron-sulfur 3 (3Fe-4S)
Metal bindingi249 – 2491Iron-sulfur 3 (3Fe-4S)
Metal bindingi253 – 2531Iron-sulfur 2 (4Fe-4S)

GO - Molecular functioni

  1. 2 iron, 2 sulfur cluster binding Source: UniProtKB
  2. 3 iron, 4 sulfur cluster binding Source: UniProtKB
  3. 4 iron, 4 sulfur cluster binding Source: UniProtKB
  4. electron carrier activity Source: InterPro
  5. metal ion binding Source: UniProtKB-KW
  6. succinate dehydrogenase (ubiquinone) activity Source: UniProtKB-EC
  7. ubiquinone binding Source: UniProtKB

GO - Biological processi

  1. tricarboxylic acid cycle Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Biological processi

Electron transport, Transport, Tricarboxylic acid cycle

Keywords - Ligandi

2Fe-2S, 3Fe-4S, 4Fe-4S, Iron, Iron-sulfur, Metal-binding

Enzyme and pathway databases

UniPathwayiUPA00223; UER01006.

Names & Taxonomyi

Protein namesi
Recommended name:
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (EC:1.3.5.1)
Alternative name(s):
Iron-sulfur subunit of complex II
Short name:
Ip
Gene namesi
Name:SDHB
OrganismiSus scrofa (Pig)
Taxonomic identifieri9823 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus
ProteomesiUP000008227: Unplaced

Subcellular locationi

Mitochondrion inner membrane By similarity; Peripheral membrane protein By similarity; Matrix side By similarity

GO - Cellular componenti

  1. mitochondrial inner membrane Source: UniProtKB
  2. mitochondrial respiratory chain complex II Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Membrane, Mitochondrion, Mitochondrion inner membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 2828MitochondrionAdd
BLAST
Chaini29 – 280252Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrialPRO_0000343799Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei51 – 511N6-acetyllysineBy similarity
Modified residuei55 – 551N6-acetyllysineBy similarity

Keywords - PTMi

Acetylation

Proteomic databases

PRIDEiQ007T0.

Interactioni

Subunit structurei

Component of complex II composed of four subunits: the flavoprotein (FP) SDHA, iron-sulfur protein (IP) SDHB, and a cytochrome b560 composed of SDHC and SDHD.1 Publication

Structurei

Secondary structure

1
280
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi39 – 468
Beta strandi51 – 533
Beta strandi57 – 648
Helixi65 – 673
Helixi72 – 8110
Beta strandi94 – 985
Beta strandi103 – 1053
Beta strandi108 – 1103
Turni112 – 1143
Beta strandi123 – 1286
Beta strandi130 – 1323
Beta strandi133 – 1375
Helixi144 – 1529
Turni163 – 1675
Helixi174 – 1785
Turni179 – 1857
Helixi193 – 1953
Helixi197 – 2026
Turni203 – 2053
Helixi208 – 21912
Helixi227 – 2326
Beta strandi236 – 2383
Turni239 – 2424
Helixi250 – 2523
Helixi259 – 27012

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1ZOYX-ray2.40B29-279[»]
1ZP0X-ray3.50B29-279[»]
3ABVX-ray3.24B29-280[»]
3AE1X-ray3.14B29-280[»]
3AE2X-ray3.10B29-280[»]
3AE3X-ray3.35B29-280[»]
3AE4X-ray2.91B29-280[»]
3AE5X-ray3.41B29-280[»]
3AE6X-ray3.40B29-280[»]
3AE7X-ray3.62B29-280[»]
3AE8X-ray3.40B29-280[»]
3AE9X-ray3.31B29-280[»]
3AEAX-ray3.39B29-280[»]
3AEBX-ray3.00B29-280[»]
3AECX-ray3.61B29-280[»]
3AEDX-ray3.52B29-280[»]
3AEEX-ray3.22B29-280[»]
3AEFX-ray2.80B29-280[»]
3AEGX-ray3.27B29-280[»]
3SFDX-ray2.61B29-280[»]
3SFEX-ray2.81B29-280[»]
ProteinModelPortaliQ007T0.
SMRiQ007T0. Positions 37-275.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ007T0.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini40 – 131922Fe-2S ferredoxin-typePROSITE-ProRule annotationAdd
BLAST
Domaini176 – 206314Fe-4S ferredoxin-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 2Fe-2S ferredoxin-type domain.PROSITE-ProRule annotation
Contains 1 4Fe-4S ferredoxin-type domain.PROSITE-ProRule annotation

Keywords - Domaini

Transit peptide

Phylogenomic databases

HOVERGENiHBG005483.
InParanoidiQ007T0.
KOiK00235.

Family and domain databases

Gene3Di3.10.20.30. 1 hit.
InterProiIPR001041. 2Fe-2S_ferredoxin-type.
IPR006058. 2Fe2S_fd_BS.
IPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
IPR012675. Beta-grasp_dom.
IPR009051. Helical_ferredxn.
IPR004489. Succ_DH/fum_Rdtase_Fe-S.
IPR025192. Succ_DH/fum_Rdtase_N.
[Graphical view]
PfamiPF13085. Fer2_3. 1 hit.
[Graphical view]
SUPFAMiSSF46548. SSF46548. 1 hit.
SSF54292. SSF54292. 1 hit.
TIGRFAMsiTIGR00384. dhsB. 1 hit.
PROSITEiPS00197. 2FE2S_FER_1. 1 hit.
PS51085. 2FE2S_FER_2. 1 hit.
PS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q007T0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAAVVAVSLK RWFPATTLGG ACLQACRGAQ TAAATAPRIK KFAIYRWDPD
60 70 80 90 100
KTGDKPHMQT YEIDLNNCGP MVLDALIKIK NEIDSTLTFR RSCREGICGS
110 120 130 140 150
CAMNINGGNT LACTRRIDTN LDKVSKIYPL PHMYVIKDLV PDLSNFYAQY
160 170 180 190 200
KSIEPYLKKK DESQEGKQQY LQSIEEREKL DGLYECILCA CCSTSCPSYW
210 220 230 240 250
WNGDKYLGPA VLMQAYRWMI DSRDDFTEER LAKLQDPFSL YRCHTIMNCT
260 270 280
GTCPKGLNPG KAIAEIKKMM ATYKEKKASA
Length:280
Mass (Da):31,586
Last modified:November 14, 2006 - v1
Checksum:i096B11189EF1ED59
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DQ915498 mRNA. Translation: ABJ09403.1.
DQ403018 mRNA. Translation: ABD77151.1.
RefSeqiNP_001098423.1. NM_001104953.1.
UniGeneiSsc.55804.

Genome annotation databases

GeneIDi414412.
KEGGissc:414412.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DQ915498 mRNA. Translation: ABJ09403.1 .
DQ403018 mRNA. Translation: ABD77151.1 .
RefSeqi NP_001098423.1. NM_001104953.1.
UniGenei Ssc.55804.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1ZOY X-ray 2.40 B 29-279 [» ]
1ZP0 X-ray 3.50 B 29-279 [» ]
3ABV X-ray 3.24 B 29-280 [» ]
3AE1 X-ray 3.14 B 29-280 [» ]
3AE2 X-ray 3.10 B 29-280 [» ]
3AE3 X-ray 3.35 B 29-280 [» ]
3AE4 X-ray 2.91 B 29-280 [» ]
3AE5 X-ray 3.41 B 29-280 [» ]
3AE6 X-ray 3.40 B 29-280 [» ]
3AE7 X-ray 3.62 B 29-280 [» ]
3AE8 X-ray 3.40 B 29-280 [» ]
3AE9 X-ray 3.31 B 29-280 [» ]
3AEA X-ray 3.39 B 29-280 [» ]
3AEB X-ray 3.00 B 29-280 [» ]
3AEC X-ray 3.61 B 29-280 [» ]
3AED X-ray 3.52 B 29-280 [» ]
3AEE X-ray 3.22 B 29-280 [» ]
3AEF X-ray 2.80 B 29-280 [» ]
3AEG X-ray 3.27 B 29-280 [» ]
3SFD X-ray 2.61 B 29-280 [» ]
3SFE X-ray 2.81 B 29-280 [» ]
ProteinModelPortali Q007T0.
SMRi Q007T0. Positions 37-275.
ModBasei Search...
MobiDBi Search...

Chemistry

ChEMBLi CHEMBL2366485.

Proteomic databases

PRIDEi Q007T0.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 414412.
KEGGi ssc:414412.

Organism-specific databases

CTDi 6390.

Phylogenomic databases

HOVERGENi HBG005483.
InParanoidi Q007T0.
KOi K00235.

Enzyme and pathway databases

UniPathwayi UPA00223 ; UER01006 .

Miscellaneous databases

EvolutionaryTracei Q007T0.

Family and domain databases

Gene3Di 3.10.20.30. 1 hit.
InterProi IPR001041. 2Fe-2S_ferredoxin-type.
IPR006058. 2Fe2S_fd_BS.
IPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
IPR012675. Beta-grasp_dom.
IPR009051. Helical_ferredxn.
IPR004489. Succ_DH/fum_Rdtase_Fe-S.
IPR025192. Succ_DH/fum_Rdtase_N.
[Graphical view ]
Pfami PF13085. Fer2_3. 1 hit.
[Graphical view ]
SUPFAMi SSF46548. SSF46548. 1 hit.
SSF54292. SSF54292. 1 hit.
TIGRFAMsi TIGR00384. dhsB. 1 hit.
PROSITEi PS00197. 2FE2S_FER_1. 1 hit.
PS51085. 2FE2S_FER_2. 1 hit.
PS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Liu G.Y.
    Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  2. "Housekeeping genes for phylogenetic analysis of eutherian relationships."
    Kullberg M., Nilsson M.A., Arnason U., Harley E.H., Janke A.
    Mol. Biol. Evol. 23:1493-1503(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 13-264.
    Tissue: Liver.
  3. "Crystal structure of mitochondrial respiratory membrane protein complex II."
    Sun F., Huo X., Zhai Y., Wang A., Xu J., Su D., Bartlam M., Rao Z.
    Cell 121:1043-1057(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) OF 29-279 IN COMPLEX WITH IRON-SULFUR CLUSTERS AND UBIQUINONE, SUBUNIT.

Entry informationi

Entry nameiSDHB_PIG
AccessioniPrimary (citable) accession number: Q007T0
Secondary accession number(s): Q0QEX6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 22, 2008
Last sequence update: November 14, 2006
Last modified: October 29, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3