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Protein

Stage V sporulation protein B

Gene

spoVB

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Involved, directly or indirectly, in spore cortex biosynthesis. Affects only indirectly the expression of late sporulation genes.

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Sporulation

Enzyme and pathway databases

BioCyciBSUB:BSU27670-MONOMER.

Protein family/group databases

TCDBi2.A.66.2.14. the multidrug/oligosaccharidyl-lipid/polysaccharide (mop) flippase superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Stage V sporulation protein B
Alternative name(s):
Stage III sporulation protein F
Gene namesi
Name:spoVB
Synonyms:spoIIIF
Ordered Locus Names:BSU27670
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001570 Componenti: Chromosome

Organism-specific databases

GenoListiBSU27670. [Micado]

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei6 – 2621HelicalSequence AnalysisAdd
BLAST
Transmembranei45 – 6521HelicalSequence AnalysisAdd
BLAST
Transmembranei91 – 11121HelicalSequence AnalysisAdd
BLAST
Transmembranei120 – 14021HelicalSequence AnalysisAdd
BLAST
Transmembranei165 – 18521HelicalSequence AnalysisAdd
BLAST
Transmembranei186 – 20621HelicalSequence AnalysisAdd
BLAST
Transmembranei250 – 27021HelicalSequence AnalysisAdd
BLAST
Transmembranei281 – 30121HelicalSequence AnalysisAdd
BLAST
Transmembranei326 – 34621HelicalSequence AnalysisAdd
BLAST
Transmembranei348 – 36821HelicalSequence AnalysisAdd
BLAST
Transmembranei387 – 40721HelicalSequence AnalysisAdd
BLAST
Transmembranei411 – 43121HelicalSequence AnalysisAdd
BLAST
Transmembranei446 – 46621HelicalSequence AnalysisAdd
BLAST
Transmembranei478 – 49821HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 518518Stage V sporulation protein BPRO_0000166451Add
BLAST

Proteomic databases

PaxDbiQ00758.

Expressioni

Developmental stagei

SpoVB transcription takes place during the second hour of sporulation. It may be transcribed mainly, if not only, in the mother cell. Indeed, it is required only in the mother cell.

Interactioni

Protein-protein interaction databases

STRINGi224308.BSU27670.

Structurei

3D structure databases

ProteinModelPortaliQ00758.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the polysaccharide synthase family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG2244.
HOGENOMiHOG000216710.
InParanoidiQ00758.
KOiK06409.
OMAiLNMLGHQ.
OrthoDBiEOG6CK7M9.
PhylomeDBiQ00758.

Family and domain databases

InterProiIPR024923. PG_synth_SpoVB.
IPR029303. Polysacc_synt_C.
IPR002797. Polysacc_synth.
IPR014249. Spore_V_B.
[Graphical view]
PfamiPF01943. Polysacc_synt. 1 hit.
PF14667. Polysacc_synt_C. 1 hit.
[Graphical view]
PIRSFiPIRSF038958. PG_synth_SpoVB. 1 hit.
TIGRFAMsiTIGR02900. spore_V_B. 1 hit.

Sequencei

Sequence statusi: Complete.

Q00758-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKQTFLKGT LILIAAGMVT RMLGFVNRVV IARFIGEEGV GLYMMAAPTF
60 70 80 90 100
FLATTLTQFG LPVAISKLVA EASARGDHQK TKNILVMSLT ITGVLSLIFT
110 120 130 140 150
PLFLFFAPVM AETMLTDKRT LYPLLAITPV VPIIAISSVL RGYFQGKQNM
160 170 180 190 200
NPLAMSQVLE QVVRISLVAV CTTIFLPYGI EYAAAGAMLS SVAGELASLL
210 220 230 240 250
YLFVCFKYKK TIKIRKHFLQ SIKNGKQTFT QLMSVSLPTT GSRFIGNLSW
260 270 280 290 300
FFEPIVVAQS LAIAGVATVA ATKQYGELTG FAMTLLTLPS FITYSLSTAL
310 320 330 340 350
VPAISEGMEQ KKLQVVEYRL EQAMRLCLLS GGISVVILFV FADELMRVMY
360 370 380 390 400
GSSGAAVFIK VMAPFFLLYY FQGPLQAVLQ ALNLAGAAMM NSLIGALVKT
410 420 430 440 450
GLIFVLATRP SLGIMGAALA IVTGMVLVTL LHAATVSKVL PISIKIKEYA
460 470 480 490 500
LSFAVIVICG FISSAIKQYI SFGASEAVNL AGWIAASAAI YMILLLVFRL
510
IKKDELRRIP IIGRLIIR
Length:518
Mass (Da):56,079
Last modified:April 1, 1993 - v1
Checksum:i2AE0A0F73FC4EE2B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M76666 Genomic DNA. Translation: AAA22806.1.
Y15896 Genomic DNA. Translation: CAB75337.1.
AL009126 Genomic DNA. Translation: CAB14727.1.
PIRiI39989.
RefSeqiNP_390645.1. NC_000964.3.
WP_004398529.1. NZ_JNCM01000036.1.

Genome annotation databases

EnsemblBacteriaiCAB14727; CAB14727; BSU27670.
GeneIDi938022.
KEGGibsu:BSU27670.
PATRICi18977398. VBIBacSub10457_2888.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M76666 Genomic DNA. Translation: AAA22806.1.
Y15896 Genomic DNA. Translation: CAB75337.1.
AL009126 Genomic DNA. Translation: CAB14727.1.
PIRiI39989.
RefSeqiNP_390645.1. NC_000964.3.
WP_004398529.1. NZ_JNCM01000036.1.

3D structure databases

ProteinModelPortaliQ00758.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.BSU27670.

Protein family/group databases

TCDBi2.A.66.2.14. the multidrug/oligosaccharidyl-lipid/polysaccharide (mop) flippase superfamily.

Proteomic databases

PaxDbiQ00758.

Protocols and materials databases

DNASUi938022.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB14727; CAB14727; BSU27670.
GeneIDi938022.
KEGGibsu:BSU27670.
PATRICi18977398. VBIBacSub10457_2888.

Organism-specific databases

GenoListiBSU27670. [Micado]

Phylogenomic databases

eggNOGiCOG2244.
HOGENOMiHOG000216710.
InParanoidiQ00758.
KOiK06409.
OMAiLNMLGHQ.
OrthoDBiEOG6CK7M9.
PhylomeDBiQ00758.

Enzyme and pathway databases

BioCyciBSUB:BSU27670-MONOMER.

Family and domain databases

InterProiIPR024923. PG_synth_SpoVB.
IPR029303. Polysacc_synt_C.
IPR002797. Polysacc_synth.
IPR014249. Spore_V_B.
[Graphical view]
PfamiPF01943. Polysacc_synt. 1 hit.
PF14667. Polysacc_synt_C. 1 hit.
[Graphical view]
PIRSFiPIRSF038958. PG_synth_SpoVB. 1 hit.
TIGRFAMsiTIGR02900. spore_V_B. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning, characterization, and expression of the spoVB gene of Bacillus subtilis."
    Popham D.L., Stragier P.
    J. Bacteriol. 173:7942-7949(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "A 17.8 kb segment in the spoVB-nadC region of the Bacillus subtilis 168 chromosome: sequencing and ruv operon identification."
    Tosato V., Bolotin A., Bertani I., Valentino I., Bruschi C.V.
    Submitted (DEC-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168.
  3. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiSP5B_BACSU
AccessioniPrimary (citable) accession number: Q00758
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1993
Last sequence update: April 1, 1993
Last modified: January 7, 2015
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.