Reviewed,
UniProtKB/Swiss-Prot Q00610 (CLH1_HUMAN)
Last modified
June 16, 2009.
Version 90.
History...
Clusters with 100%,
90%,
50% identity |
Documents (3) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Clathrin heavy chain 1 Alternative name(s): CLH-17 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1675 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Two different adapter protein complexes link the clathrin lattice either to the plasma membrane or to the trans-Golgi network. |
| Subunit structure | Clathrin triskelions, composed of 3 heavy chains and 3 light chains, are the basic subunits of the clathrin coat. In the presence of light chains, hub assembly is influenced by both the pH and the concentration of calcium. Interacts with HIP1. Ref.7 |
| Subcellular location | Cytoplasmic vesicle membrane; Peripheral membrane protein; Cytoplasmic side. Membrane › coated pit; Peripheral membrane protein; Cytoplasmic side. Melanosome. Note: Cytoplasmic face of coated pits and vesicles. Identified by mass spectrometry in melanosome fractions from stage I to stage IV. Ref.9 |
| Sequence similarities | Belongs to the clathrin heavy chain family. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Coated pit Cytoplasmic vesicle Membrane |
| Coding sequence diversity | Alternative splicing |
| PTM | Acetylation Phosphoprotein |
| Technical term | Direct protein sequencing |
| Gene Ontology (GO) | |
| Biological process | intracellular protein transport Ref.4 Non-traceable author statement. Source: UniProtKB vesicle-mediated transportInferred from electronic annotation. Source: InterPro |
| Cellular component | clathrin coat of coated pit Inferred from electronic annotation. Source: InterPro clathrin coat of trans-Golgi network vesicleInferred from electronic annotation. Source: InterPro melanosomeInferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | protein binding Inferred from physical interaction. Source: IntAct structural molecule activity Ref.4Non-traceable author statement. Source: UniProtKB |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| ACK2 | O02742 | 1 | EBI-354967,EBI-457220 | From a different organism. |
| IKBKE | Q14164 | 1 | EBI-354967,EBI-307369 | |
| MCC | P23508 | 1 | EBI-354967,EBI-307531 | |
| NDRG1 | Q92597 | 1 | EBI-354967,EBI-716486 | |
| TFE3 | P19532 | 1 | EBI-354967,EBI-1048957 |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q00610-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q00610-2) The sequence of this isoform differs from the canonical sequence as follows: 1636-1639: QPQL → NLSL 1640-1675: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Initiator methionine | 1 | 1 | Removed Ref.5 Ref.6 | ||||||
| Chain | 2 – 1675 | 1674 | Clathrin heavy chain 1 | PRO_0000205778 | |||||
Regions | |||||||||
| Region | 2 – 479 | 478 | Globular terminal domain | ||||||
| Region | 449 – 465 | 17 | Binding site for the uncoating ATPase, involved in lattice disassembly Potential | ||||||
| Region | 480 – 523 | 44 | Flexible linker | ||||||
| Region | 524 – 1675 | 1152 | Heavy chain arm | ||||||
| Region | 524 – 634 | 111 | Distal segment | ||||||
| Region | 639 – 1675 | 1037 | Proximal segment | ||||||
| Region | 1213 – 1522 | 310 | Involved in binding clathrin light chain By similarity | ||||||
| Region | 1550 – 1675 | 126 | Trimerization By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 2 | 1 | N-acetylalanine Ref.6 | ||||||
| Modified residue | 394 | 1 | Phosphothreonine Ref.8 Ref.11 Ref.12 | ||||||
| Modified residue | 634 | 1 | Phosphotyrosine Ref.10 | ||||||
| Modified residue | 883 | 1 | Phosphotyrosine Ref.11 | ||||||
| Modified residue | 899 | 1 | Phosphotyrosine Ref.10 | ||||||
| Modified residue | 1494 | 1 | Phosphoserine Ref.8 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1636 – 1639 | 4 | QPQL → NLSL in isoform 2. | VSP_011570 | |||||
| Alternative sequence | 1640 – 1675 | 36 | Missing in isoform 2. | VSP_011571 | |||||
Experimental info | |||||||||
| Sequence conflict | 560 | 1 | Q → R in CAA39363. Ref.4 | ||||||
| Sequence conflict | 817 | 1 | G → V in CAA39363. Ref.4 | ||||||
| Sequence conflict | 923 | 1 | R → H in CAE45761. Ref.2 | ||||||
| Sequence conflict | 1563 | 1 | R → G in CAE45761. Ref.2 | ||||||
| Sequence conflict | 1652 | 1 | Q → R in CAE45761. Ref.2 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Prediction of the coding sequences of unidentified human genes. I. The coding sequences of 40 new genes (KIAA0001-KIAA0040) deduced by analysis of randomly sampled cDNA clones from human immature myeloid cell line KG-1." Nomura N., Miyajima N., Sazuka T., Tanaka A., Kawarabayasi Y., Sato S., Nagase T., Seki N., Ishikawa K., Tabata S. DNA Res. 1:27-35(1994) [PubMed: 7584026] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Bone marrow. |
| [2] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Blocker H., Heubner D., Hoerlein A., Michel G., Wedler H., Kohrer K., Ottenwalder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Fetal kidney. |
| [3] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2). Tissue: PNS and Testis. |
| [4] | "Human clathrin heavy chain (CLTC): partial molecular cloning, expression, and mapping of the gene to human chromosome 17q11-qter." Dodge G.R., Kovalszky I., McBride O.W., Yi H.F., Chu M.-L., Saitta B., Stokes D.G., Iozzo R.V. Genomics 11:174-178(1991) [PubMed: 1765375] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 560-864 (ISOFORMS 1/2). Tissue: Colon. |
| [5] | "Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides." Gevaert K., Goethals M., Martens L., Van Damme J., Staes A., Thomas G.R., Vandekerckhove J. Nat. Biotechnol. 21:566-569(2003) [PubMed: 12665801] [Abstract] Cited for: PROTEIN SEQUENCE OF 2-8. Tissue: Platelet. |
| [6] | Bienvenut W.V., Calvo F., Matallanas D., Cooper W.N., Boldt K., von Kriegsheim A.F., Kolch W. Submitted (FEB-2008) to UniProtKB Cited for: PROTEIN SEQUENCE OF 2-8; 64-78; 87-96; 164-205; 228-245; 270-278; 298-320; 355-382; 469-481; 507-519; 572-610; 626-638; 799-806; 831-852; 855-865; 882-903; 1011-1037; 1074-1101; 1123-1130; 1166-1179; 1183-1204; 1216-1245; 1312-1326; 1398-1406; 1435-1453; 1482-1498; 1502-1508; 1510-1516 AND 1610-1620, CLEAVAGE OF INITIATOR METHIONINE, ACETYLATION AT ALA-2, MASS SPECTROMETRY. Tissue: Cervix carcinoma, Hepatoma and Mammary carcinoma. |
| [7] | "The huntingtin interacting protein HIP1 is a clathrin and alpha-adaptin-binding protein involved in receptor-mediated endocytosis." Waelter S., Scherzinger E., Hasenbank R., Nordhoff E., Lurz R., Goehler H., Gauss C., Sathasivam K., Bates G.P., Lehrach H., Wanker E.E. Hum. Mol. Genet. 10:1807-1817(2001) [PubMed: 11532990] [Abstract] Cited for: INTERACTION WITH HIP1. |
| [8] | "Large-scale characterization of HeLa cell nuclear phosphoproteins." Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J., Li J., Cohn M.A., Cantley L.C., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004) [PubMed: 15302935] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-394 AND SER-1494, MASS SPECTROMETRY. Tissue: Epithelium. |
| [9] | "Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes." Chi A., Valencia J.C., Hu Z.-Z., Watabe H., Yamaguchi H., Mangini N.J., Huang H., Canfield V.A., Cheng K.C., Yang F., Abe R., Yamagishi S., Shabanowitz J., Hearing V.J., Wu C., Appella E., Hunt D.F. J. Proteome Res. 5:3135-3144(2006) [PubMed: 17081065] [Abstract] Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. |
| [10] | "Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer." Rikova K., Guo A., Zeng Q., Possemato A., Yu J., Haack H., Nardone J., Lee K., Reeves C., Li Y., Hu Y., Tan Z., Stokes M., Sullivan L., Mitchell J., Wetzel R., Macneill J., Ren J.M. Comb M.J.Cell 131:1190-1203(2007) [PubMed: 18083107] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-634 AND TYR-899, MASS SPECTROMETRY. |
| [11] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-394 AND TYR-883, MASS SPECTROMETRY. |
| [12] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-394, MASS SPECTROMETRY. |
| [13] | Colinge J., Superti-Furga G., Bennett K.L. Submitted (OCT-2008) to UniProtKB Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. |
| + | Additional computationally mapped references. |
Web resources
Cross-references
Sequence databases | |
|---|---|
| D21260 mRNA. Translation: BAA04801.2. Different initiation. BX640615 mRNA. Translation: CAE45761.1. BC051800 mRNA. Translation: AAH51800.1. BC054489 mRNA. Translation: AAH54489.1. X55878 mRNA. Translation: CAA39363.1. | |
| IPI | IPI00024067. IPI00455383. |
| PIR | A40573. |
| RefSeq | NP_004850.1. |
| UniGene | Hs.491351 Hs.663896 |
3D structure databases | |
| HSSP | HSSP built from PDB template 1BPO based on UniProtKB P11442. |
| SMR | Q00610. Positions 1-493. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q00610. 34 interactions. |
PTM databases | |
| PhosphoSite | Q00610. |
Proteomic databases | |
| PRIDE | Q00610. |
Genome annotation databases | |
| Ensembl | ENSG00000141367. Homo sapiens. [Contig view] |
| GeneID | 1213. |
| KEGG | hsa:1213. |
Organism-specific databases | |
| GeneCards | GC17P055052. |
| H-InvDB | HIX0014044. |
| HGNC | HGNC:2092. CLTC. |
| HPA | CAB010389. CAB017155. |
| MIM | 118955. gene. |
| PharmGKB | PA26618. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOGENOM | Q00610. |
| HOVERGEN | Q00610. |
| OMA | Q00610. LDFRSTT. |
Enzyme and pathway databases | |
| Pathway_Interaction_DB | arf6_traffickingpathway. Arf6 trafficking events. |
| Reactome | REACT_11061. Signalling by NGF. REACT_11123. Membrane Trafficking. REACT_9417. Signaling by EGFR. REACT_9480. Gap junction trafficking and regulation. |
Gene expression databases | |
| ArrayExpress | Q00610. |
| Bgee | Q00610. |
| CleanEx | HS_CLTC. |
| GermOnline | ENSG00000141367. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR000547. Clathrin_H-chain/VPS_repeat. IPR016025. Clathrin_H-chain_link/propller. IPR015348. Clathrin_H-chain_linker_core. IPR001473. Clathrin_H-chain_propeller_N. IPR016341. Clathrin_heavy_chain. IPR011990. TPR-like_helical. [Graphical view] |
| Gene3D | G3DSA:2.130.10.110. Clathrin_H-chain_link/propller. 1 hit. G3DSA:1.25.40.10. TPR-like_helical. 1 hit. |
| Pfam | PF00637. Clathrin. 7 hits. PF09268. Clathrin-link. 1 hit. PF01394. Clathrin_propel. 7 hits. [Graphical view] |
| PIRSF | PIRSF002290. Clathrin_H_chain. 1 hit. |
| SMART | SM00299. CLH. 7 hits. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| NextBio | 4999. |
| SOURCE | Search... |
Entry information
| Entry name | CLH1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q00610 Secondary accession number(s): Q6N0A0, Q86TF2 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
Relevant documents
| Human chromosome 17 Human chromosome 17: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with


