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Q00560

- IL6RB_MOUSE

UniProt

Q00560 - IL6RB_MOUSE

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Protein
Interleukin-6 receptor subunit beta
Gene
Il6st
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Signal-transducing molecule. The receptor systems for IL6, LIF, OSM, CNTF, IL11, CTF1 and BSF3 can utilize gp130 for initiating signal transmission. Binds to IL6/IL6R (alpha chain) complex, resulting in the formation of high-affinity IL6 binding sites, and transduces the signal. Does not bind IL6. May have a role in embryonic development.

GO - Molecular functioni

  1. cytokine receptor activity Source: InterPro
  2. protein binding Source: IntAct
Complete GO annotation...

GO - Biological processi

  1. cytokine-mediated signaling pathway Source: MGI
  2. glycogen metabolic process Source: MGI
  3. interleukin-11-mediated signaling pathway Source: GOC
  4. positive regulation of astrocyte differentiation Source: MGI
  5. positive regulation of cell proliferation Source: MGI
  6. regulation of Notch signaling pathway Source: MGI
  7. signal transduction Source: MGI
Complete GO annotation...

Keywords - Molecular functioni

Receptor

Enzyme and pathway databases

ReactomeiREACT_199118. Interleukin-6 signaling.

Names & Taxonomyi

Protein namesi
Recommended name:
Interleukin-6 receptor subunit beta
Short name:
IL-6 receptor subunit beta
Short name:
IL-6R subunit beta
Short name:
IL-6R-beta
Short name:
IL-6RB
Alternative name(s):
Interleukin-6 signal transducer
Membrane glycoprotein 130
Short name:
gp130
Oncostatin-M receptor subunit alpha
CD_antigen: CD130
Gene namesi
Name:Il6st
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 13

Organism-specific databases

MGIiMGI:96560. Il6st.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini23 – 617595Extracellular Reviewed prediction
Add
BLAST
Transmembranei618 – 63922Helical; Reviewed prediction
Add
BLAST
Topological domaini640 – 917278Cytoplasmic Reviewed prediction
Add
BLAST

GO - Cellular componenti

  1. cell body Source: MGI
  2. dendrite Source: MGI
  3. external side of plasma membrane Source: MGI
  4. integral component of membrane Source: UniProtKB-KW
  5. neuronal cell body Source: MGI
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222 Reviewed prediction
Add
BLAST
Chaini23 – 917895Interleukin-6 receptor subunit beta
PRO_0000010900Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi28 ↔ 54 By similarity
Glycosylationi43 – 431N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi48 ↔ 103 By similarity
Glycosylationi61 – 611N-linked (GlcNAc...) Reviewed prediction
Glycosylationi83 – 831N-linked (GlcNAc...) Reviewed prediction
Glycosylationi131 – 1311N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi134 ↔ 144 By similarity
Glycosylationi157 – 1571N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi172 ↔ 180 By similarity
Glycosylationi225 – 2251N-linked (GlcNAc...)1 Publication
Glycosylationi388 – 3881N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi456 ↔ 464 By similarity
Glycosylationi476 – 4761N-linked (GlcNAc...) Reviewed prediction
Glycosylationi551 – 5511N-linked (GlcNAc...) Reviewed prediction
Modified residuei665 – 6651Phosphoserine By similarity
Modified residuei780 – 7801Phosphoserine By similarity
Modified residuei827 – 8271Phosphoserine By similarity

Post-translational modificationi

Phosphorylation of Ser-780 down-regulates cell surface expression By similarity.

Keywords - PTMi

Disulfide bond, Glycoprotein, Phosphoprotein

Proteomic databases

PaxDbiQ00560.
PRIDEiQ00560.

PTM databases

PhosphoSiteiQ00560.

Expressioni

Tissue specificityi

Found in tissues such as brain, heart, thymus, spleen, kidney, lung and liver. Found in all the cell lines tested except BaF-B03. Expression not restricted to IL6-responsive cells.

Developmental stagei

In embryonic stem cells it is found from day 6 of gestation. It reaches a peak on day 8 and gradually declines during the rest of embryogenesis.

Gene expression databases

ArrayExpressiQ00560.
CleanExiMM_IL6ST.
GenevestigatoriQ00560.

Interactioni

Subunit structurei

Component of a hexamer of two molecules each of IL6, IL6R and IL6ST. Interacts with HCK By similarity. Forms heterodimers composed of LIPR and IL6ST (type I OSM receptor). Also forms heterodimers composed of OSMR and IL6ST (type II OSM receptor). Interacts with INPP5D/SHIP1.2 Publications

Binary interactionsi

WithEntry#Exp.IntActNotes
Il12rb2P973782EBI-3862992,EBI-6253448
Socs3O357183EBI-3862992,EBI-2659360

Protein-protein interaction databases

DIPiDIP-5782N.
IntActiQ00560. 6 interactions.
MINTiMINT-3382082.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2BBUNMR-B750-764[»]
2HMHX-ray2.00B753-763[»]
4GL9X-ray3.90I/J/K/L750-764[»]
ProteinModelPortaliQ00560.
SMRiQ00560. Positions 24-610.

Miscellaneous databases

EvolutionaryTraceiQ00560.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini26 – 12095Ig-like C2-type
Add
BLAST
Domaini128 – 22194Fibronectin type-III 1
Add
BLAST
Domaini222 – 322101Fibronectin type-III 2
Add
BLAST
Domaini327 – 41791Fibronectin type-III 3
Add
BLAST
Domaini422 – 51594Fibronectin type-III 4
Add
BLAST
Domaini517 – 61195Fibronectin type-III 5
Add
BLAST

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi308 – 3125WSXWS motif
Motifi649 – 6579Box 1 motif

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi723 – 74119Ser-rich
Add
BLAST

Domaini

The WSXWS motif appears to be necessary for proper protein folding and thereby efficient intracellular transport and cell-surface receptor binding.
The box 1 motif is required for JAK interaction and/or activation.

Sequence similaritiesi

Keywords - Domaini

Immunoglobulin domain, Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG145009.
GeneTreeiENSGT00550000074436.
HOGENOMiHOG000015771.
HOVERGENiHBG052119.
InParanoidiQ00560.
KOiK05060.
OMAiFKQNCSQ.
OrthoDBiEOG7FXZXN.
TreeFamiTF338122.

Family and domain databases

Gene3Di2.60.40.10. 6 hits.
InterProiIPR003961. Fibronectin_type3.
IPR003529. Hematopoietin_rcpt_Gp130_CS.
IPR013783. Ig-like_fold.
IPR010457. IgC2-like_lig-bd.
IPR015321. IL-6_rcpt_alpha-bd.
[Graphical view]
PfamiPF00041. fn3. 2 hits.
PF09240. IL6Ra-bind. 1 hit.
PF06328. Lep_receptor_Ig. 1 hit.
[Graphical view]
SMARTiSM00060. FN3. 5 hits.
[Graphical view]
SUPFAMiSSF49265. SSF49265. 4 hits.
PROSITEiPS50853. FN3. 5 hits.
PS01353. HEMATOPO_REC_L_F2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q00560-1 [UniParc]FASTAAdd to Basket

« Hide

MSAPRIWLAQ ALLFFLTTES IGQLLEPCGY IYPEFPVVQR GSNFTAICVL    50
KEACLQHYYV NASYIVWKTN HAAVPREQVT VINRTTSSVT FTDVVLPSVQ 100
LTCNILSFGQ IEQNVYGVTM LSGFPPDKPT NLTCIVNEGK NMLCQWDPGR 150
ETYLETNYTL KSEWATEKFP DCQSKHGTSC MVSYMPTYYV NIEVWVEAEN 200
ALGKVSSESI NFDPVDKVKP TPPYNLSVTN SEELSSILKL SWVSSGLGGL 250
LDLKSDIQYR TKDASTWIQV PLEDTMSPRT SFTVQDLKPF TEYVFRIRSI 300
KDSGKGYWSD WSEEASGTTY EDRPSRPPSF WYKTNPSHGQ EYRSVRLIWK 350
ALPLSEANGK ILDYEVILTQ SKSVSQTYTV TGTELTVNLT NDRYVASLAA 400
RNKVGKSAAA VLTIPSPHVT AAYSVVNLKA FPKDNLLWVE WTPPPKPVSK 450
YILEWCVLSE NAPCVEDWQQ EDATVNRTHL RGRLLESKCY QITVTPVFAT 500
GPGGSESLKA YLKQAAPARG PTVRTKKVGK NEAVLAWDQI PVDDQNGFIR 550
NYSISYRTSV GKEMVVHVDS SHTEYTLSSL SSDTLYMVRM AAYTDEGGKD 600
GPEFTFTTPK FAQGEIEAIV VPVCLAFLLT TLLGVLFCFN KRDLIKKHIW 650
PNVPDPSKSH IAQWSPHTPP RHNFNSKDQM YSDGNFTDVS VVEIEANNKK 700
PCPDDLKSVD LFKKEKVSTE GHSSGIGGSS CMSSSRPSIS SNEENESAQS 750
TASTVQYSTV VHSGYRHQVP SVQVFSRSES TQPLLDSEER PEDLQLVDSV 800
DGGDEILPRQ PYFKQNCSQP EACPEISHFE RSNQVLSGNE EDFVRLKQQQ 850
VSDHISQPYG SEQRRLFQEG STADALGTGA DGQMERFESV GMETTIDEEI 900
PKSYLPQTVR QGGYMPQ 917
Length:917
Mass (Da):102,451
Last modified:October 3, 2012 - v2
Checksum:iEDA69AB865E5A6E8
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti756 – 7561Q → E in CAA44515. 1 Publication
Sequence conflicti756 – 7561Q → E in AAA37723. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X62646 mRNA. Translation: CAA44515.1.
M83336 mRNA. Translation: AAA37723.1.
AC159196 Genomic DNA. No translation available.
CH466568 Genomic DNA. Translation: EDL18412.1.
CCDSiCCDS26773.1.
PIRiI49699.
RefSeqiNP_034690.3. NM_010560.3.
UniGeneiMm.4364.

Genome annotation databases

EnsembliENSMUST00000070731; ENSMUSP00000064205; ENSMUSG00000021756.
ENSMUST00000183663; ENSMUSP00000138836; ENSMUSG00000021756.
ENSMUST00000184311; ENSMUSP00000139227; ENSMUSG00000021756.
GeneIDi16195.
KEGGimmu:16195.
UCSCiuc007rwg.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X62646 mRNA. Translation: CAA44515.1 .
M83336 mRNA. Translation: AAA37723.1 .
AC159196 Genomic DNA. No translation available.
CH466568 Genomic DNA. Translation: EDL18412.1 .
CCDSi CCDS26773.1.
PIRi I49699.
RefSeqi NP_034690.3. NM_010560.3.
UniGenei Mm.4364.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2BBU NMR - B 750-764 [» ]
2HMH X-ray 2.00 B 753-763 [» ]
4GL9 X-ray 3.90 I/J/K/L 750-764 [» ]
ProteinModelPortali Q00560.
SMRi Q00560. Positions 24-610.
ModBasei Search...

Protein-protein interaction databases

DIPi DIP-5782N.
IntActi Q00560. 6 interactions.
MINTi MINT-3382082.

PTM databases

PhosphoSitei Q00560.

Proteomic databases

PaxDbi Q00560.
PRIDEi Q00560.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000070731 ; ENSMUSP00000064205 ; ENSMUSG00000021756 .
ENSMUST00000183663 ; ENSMUSP00000138836 ; ENSMUSG00000021756 .
ENSMUST00000184311 ; ENSMUSP00000139227 ; ENSMUSG00000021756 .
GeneIDi 16195.
KEGGi mmu:16195.
UCSCi uc007rwg.2. mouse.

Organism-specific databases

CTDi 3572.
MGIi MGI:96560. Il6st.

Phylogenomic databases

eggNOGi NOG145009.
GeneTreei ENSGT00550000074436.
HOGENOMi HOG000015771.
HOVERGENi HBG052119.
InParanoidi Q00560.
KOi K05060.
OMAi FKQNCSQ.
OrthoDBi EOG7FXZXN.
TreeFami TF338122.

Enzyme and pathway databases

Reactomei REACT_199118. Interleukin-6 signaling.

Miscellaneous databases

EvolutionaryTracei Q00560.
NextBioi 289117.
PROi Q00560.
SOURCEi Search...

Gene expression databases

ArrayExpressi Q00560.
CleanExi MM_IL6ST.
Genevestigatori Q00560.

Family and domain databases

Gene3Di 2.60.40.10. 6 hits.
InterProi IPR003961. Fibronectin_type3.
IPR003529. Hematopoietin_rcpt_Gp130_CS.
IPR013783. Ig-like_fold.
IPR010457. IgC2-like_lig-bd.
IPR015321. IL-6_rcpt_alpha-bd.
[Graphical view ]
Pfami PF00041. fn3. 2 hits.
PF09240. IL6Ra-bind. 1 hit.
PF06328. Lep_receptor_Ig. 1 hit.
[Graphical view ]
SMARTi SM00060. FN3. 5 hits.
[Graphical view ]
SUPFAMi SSF49265. SSF49265. 4 hits.
PROSITEi PS50853. FN3. 5 hits.
PS01353. HEMATOPO_REC_L_F2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular cloning of a murine IL-6 receptor-associated signal transducer, gp130, and its regulated expression in vivo."
    Saito M., Yoshida K., Hibi M., Taga T., Kishimoto T.
    J. Immunol. 148:4066-4071(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: ICR.
    Tissue: Macrophage.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  3. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
    Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. "Reconstitution of the functional mouse oncostatin M (OSM) receptor: molecular cloning of the OSM receptor beta subunit."
    Tanaka M., Hara T., Copeland N.G., Gilbert D.J., Jenkins N.A., Miyajima A.
    Blood 93:804-815(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBUNIT.
  5. "s-SHIP associates with receptor complexes essential for pluripotent stem cell growth and survival."
    Desponts C., Ninos J.M., Kerr W.G.
    Stem Cells Dev. 15:641-646(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH INPP5D.
  6. "The phagosomal proteome in interferon-gamma-activated macrophages."
    Trost M., English L., Lemieux S., Courcelles M., Desjardins M., Thibault P.
    Immunity 30:143-154(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  7. "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins."
    Wollscheid B., Bausch-Fluck D., Henderson C., O'Brien R., Bibel M., Schiess R., Aebersold R., Watts J.D.
    Nat. Biotechnol. 27:378-386(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-225.

Entry informationi

Entry nameiIL6RB_MOUSE
AccessioniPrimary (citable) accession number: Q00560
Secondary accession number(s): G5E8D2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: October 3, 2012
Last modified: September 3, 2014
This is version 136 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi