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Q00011

- CAPSD_BYDVR

UniProt

Q00011 - CAPSD_BYDVR

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Protein

Major capsid protein

Gene

ORF3

Organism
Barley yellow dwarf virus (isolate P-PAV) (BYDV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Major capsid protein.

GO - Molecular functioni

  1. structural molecule activity Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Major capsid protein
Alternative name(s):
Coat protein
Short name:
CP
Gene namesi
ORF Names:ORF3
OrganismiBarley yellow dwarf virus (isolate P-PAV) (BYDV)
Taxonomic identifieri31724 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageLuteoviridaeLuteovirus
Virus hostiAvena byzantina [TaxID: 146531]
Avena sativa (Oat) [TaxID: 4498]
Hordeum vulgare (Barley) [TaxID: 4513]
Lolium multiflorum (Italian ryegrass) (Lolium perenne subsp. multiflorum) [TaxID: 4521]
Lolium perenne (Perennial ryegrass) [TaxID: 4522]
Oryza sativa (Rice) [TaxID: 4530]
Secale cereale (Rye) [TaxID: 4550]
Triticum aestivum (Wheat) [TaxID: 4565]
Zea mays (Maize) [TaxID: 4577]

Subcellular locationi

Virion Curated

GO - Cellular componenti

  1. T=3 icosahedral viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 200200Major capsid proteinPRO_0000222409Add
BLAST

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi6 – 4843Arg-richAdd
BLAST
Compositional biasi28 – 314Poly-Val

Sequence similaritiesi

Belongs to the luteoviruses capsid protein family.Curated

Family and domain databases

InterProiIPR001517. Luteo_coat.
[Graphical view]
PfamiPF00894. Luteo_coat. 1 hit.
[Graphical view]
PRINTSiPR00915. LUTEOGP1COAT.

Sequencei

Sequence statusi: Complete.

Q00011-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MNSVGRRGPR RANQNGTRRR RRRTVRPVVV VQPNRAGPRR RNGRRKGRGG
60 70 80 90 100
ANPVFRPTGG TEVFVFSVDN LKANSSGAIK FGPSLSQCPA LSDGILKSYH
110 120 130 140 150
RYKITSIRVE FKSHASATTA GAIFIELDTA CKQSALGSYI NSFTISRTAA
160 170 180 190 200
KVFRAEAING KEFQESTIDQ FWMLYKANGT TTDTAGQFII TMSVSLMTAK
Length:200
Mass (Da):21,978
Last modified:December 1, 1992 - v1
Checksum:i4E667612BEC54020
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti124 – 1241F → L.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X17261 Genomic RNA. Translation: CAA35164.1.
D11032 Genomic RNA. Translation: BAA01787.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X17261 Genomic RNA. Translation: CAA35164.1 .
D11032 Genomic RNA. Translation: BAA01787.1 .

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Family and domain databases

InterProi IPR001517. Luteo_coat.
[Graphical view ]
Pfami PF00894. Luteo_coat. 1 hit.
[Graphical view ]
PRINTSi PR00915. LUTEOGP1COAT.
ProtoNeti Search...

Publicationsi

  1. "Nucleotide sequences of coat protein genes for three isolates of barley yellow dwarf virus and their relationships to other luteovirus coat protein sequences."
    Vincent J.R., Ueng P.P., Lister R.M., Larkins B.A.
    J. Gen. Virol. 71:2791-2799(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
  2. "Nucleotide sequence analysis of the genomes of the MAV-PS1 and P-PAV isolates of barley yellow dwarf virus."
    Ueng P.P., Vincent J.R., Kawata E.E., Lei C.H., Lister R.M., Larkins B.A.
    J. Gen. Virol. 73:487-492(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiCAPSD_BYDVR
AccessioniPrimary (citable) accession number: Q00011
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: December 1, 1992
Last modified: October 1, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Miscellaneous

The N-terminal region like those of many plant virus capsid proteins is highly basic. It has been suggested that these regions may be involved in protein-RNA interaction.

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3