Q00011 (CAPSD_BYDVR) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Major capsid protein

Alternative name(s):
Coat protein
Short name=CP

Gene names

ORF Names:

ORF3

Organism

Barley yellow dwarf virus (isolate P-PAV) (BYDV)

Taxonomic identifier

31724 [NCBI]

Taxonomic lineage

Viruses › ssRNA viruses › ssRNA positive-strand viruses, no DNA stage › Luteoviridae › Luteovirus › Barley yellow dwarf virus (isolate PAV)

Virus host

Avena byzantina [TaxID: 146531]
Avena sativa (Oat) [TaxID: 4498]
Hordeum vulgare (Barley) [TaxID: 4513]
Lolium multiflorum (Italian ryegrass) (Lolium perenne subsp. multiflorum) [TaxID: 4521]
Lolium perenne (Perennial ryegrass) [TaxID: 4522]
Oryza sativa (Rice) [TaxID: 4530]
Secale cereale (Rye) [TaxID: 4550]
Triticum aestivum (Wheat) [TaxID: 4565]
Zea mays (Maize) [TaxID: 4577]

Protein attributes

Sequence length	200 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Major capsid protein.
Subcellular location	Virion Potential.
Miscellaneous	The N-terminal region like those of many plant virus capsid proteins is highly basic. It has been suggested that these regions may be involved in protein-RNA interaction.
Sequence similarities	Belongs to the luteoviruses capsid protein family.

Ontologies

Keywords
Cellular component	Virion
Molecular function	Capsid protein T=3 icosahedral capsid protein
Gene Ontology (GO)
Cellular_component	T=3 icosahedral viral capsid Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	structural molecule activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 200	200	Major capsid protein		PRO_0000222409
Regions
	Compositional bias	6 – 48	43	Arg-rich
	Compositional bias	28 – 31	4	Poly-Val
Natural variations
	Natural variant	124	1	F → L.

Sequences

	Sequence		Length	Mass (Da)
	Q00011 [UniParc]. Last modified December 1, 1992. Version 1. Checksum: 4E667612BEC54020	FASTA	200	21,978
	10 20 30 40 50 60 MNSVGRRGPR RANQNGTRRR RRRTVRPVVV VQPNRAGPRR RNGRRKGRGG ANPVFRPTGG 70 80 90 100 110 120 TEVFVFSVDN LKANSSGAIK FGPSLSQCPA LSDGILKSYH RYKITSIRVE FKSHASATTA 130 140 150 160 170 180 GAIFIELDTA CKQSALGSYI NSFTISRTAA KVFRAEAING KEFQESTIDQ FWMLYKANGT 190 200 TTDTAGQFII TMSVSLMTAK

References

[1]	"Nucleotide sequences of coat protein genes for three isolates of barley yellow dwarf virus and their relationships to other luteovirus coat protein sequences." Vincent J.R., Ueng P.P., Lister R.M., Larkins B.A. J. Gen. Virol. 71:2791-2799(1990) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
[2]	"Nucleotide sequence analysis of the genomes of the MAV-PS1 and P-PAV isolates of barley yellow dwarf virus." Ueng P.P., Vincent J.R., Kawata E.E., Lei C.H., Lister R.M., Larkins B.A. J. Gen. Virol. 73:487-492(1992) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	X17261 Genomic RNA. Translation: CAA35164.1. D11032 Genomic RNA. Translation: BAA01787.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Family and domain databases
InterPro	IPR001517. Luteo_coat. [Graphical view]
Pfam	PF00894. Luteo_coat. 1 hit. [Graphical view]
PRINTS	PR00915. LUTEOGP1COAT.
ProtoNet	Search...

Entry information

Entry name

CAPSD_BYDVR

Accession

Primary (citable) accession number: Q00011

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 1, 1992
Last sequence update:	December 1, 1992
Last modified:	April 3, 2013
This is version 45 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Viral Protein Annotation Program