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Q00011

- CAPSD_BYDVR

UniProt

Q00011 - CAPSD_BYDVR

Protein

Major capsid protein

Gene

ORF3

Organism
Barley yellow dwarf virus (isolate P-PAV) (BYDV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 46 (01 Oct 2014)
      Sequence version 1 (01 Dec 1992)
      Previous versions | rss
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    Functioni

    Major capsid protein.

    GO - Molecular functioni

    1. structural molecule activity Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Major capsid protein
    Alternative name(s):
    Coat protein
    Short name:
    CP
    Gene namesi
    ORF Names:ORF3
    OrganismiBarley yellow dwarf virus (isolate P-PAV) (BYDV)
    Taxonomic identifieri31724 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageLuteoviridaeLuteovirus
    Virus hostiAvena byzantina [TaxID: 146531]
    Avena sativa (Oat) [TaxID: 4498]
    Hordeum vulgare (Barley) [TaxID: 4513]
    Lolium multiflorum (Italian ryegrass) (Lolium perenne subsp. multiflorum) [TaxID: 4521]
    Lolium perenne (Perennial ryegrass) [TaxID: 4522]
    Oryza sativa (Rice) [TaxID: 4530]
    Secale cereale (Rye) [TaxID: 4550]
    Triticum aestivum (Wheat) [TaxID: 4565]
    Zea mays (Maize) [TaxID: 4577]

    Subcellular locationi

    Virion Curated

    GO - Cellular componenti

    1. T=3 icosahedral viral capsid Source: UniProtKB-KW

    Keywords - Cellular componenti

    Capsid protein, T=3 icosahedral capsid protein, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 200200Major capsid proteinPRO_0000222409Add
    BLAST

    Family & Domainsi

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi6 – 4843Arg-richAdd
    BLAST
    Compositional biasi28 – 314Poly-Val

    Sequence similaritiesi

    Belongs to the luteoviruses capsid protein family.Curated

    Family and domain databases

    InterProiIPR001517. Luteo_coat.
    [Graphical view]
    PfamiPF00894. Luteo_coat. 1 hit.
    [Graphical view]
    PRINTSiPR00915. LUTEOGP1COAT.

    Sequencei

    Sequence statusi: Complete.

    Q00011-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNSVGRRGPR RANQNGTRRR RRRTVRPVVV VQPNRAGPRR RNGRRKGRGG    50
    ANPVFRPTGG TEVFVFSVDN LKANSSGAIK FGPSLSQCPA LSDGILKSYH 100
    RYKITSIRVE FKSHASATTA GAIFIELDTA CKQSALGSYI NSFTISRTAA 150
    KVFRAEAING KEFQESTIDQ FWMLYKANGT TTDTAGQFII TMSVSLMTAK 200
    Length:200
    Mass (Da):21,978
    Last modified:December 1, 1992 - v1
    Checksum:i4E667612BEC54020
    GO

    Natural variant

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Natural varianti124 – 1241F → L.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X17261 Genomic RNA. Translation: CAA35164.1.
    D11032 Genomic RNA. Translation: BAA01787.1.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X17261 Genomic RNA. Translation: CAA35164.1 .
    D11032 Genomic RNA. Translation: BAA01787.1 .

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Family and domain databases

    InterProi IPR001517. Luteo_coat.
    [Graphical view ]
    Pfami PF00894. Luteo_coat. 1 hit.
    [Graphical view ]
    PRINTSi PR00915. LUTEOGP1COAT.
    ProtoNeti Search...

    Publicationsi

    1. "Nucleotide sequences of coat protein genes for three isolates of barley yellow dwarf virus and their relationships to other luteovirus coat protein sequences."
      Vincent J.R., Ueng P.P., Lister R.M., Larkins B.A.
      J. Gen. Virol. 71:2791-2799(1990) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
    2. "Nucleotide sequence analysis of the genomes of the MAV-PS1 and P-PAV isolates of barley yellow dwarf virus."
      Ueng P.P., Vincent J.R., Kawata E.E., Lei C.H., Lister R.M., Larkins B.A.
      J. Gen. Virol. 73:487-492(1992) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

    Entry informationi

    Entry nameiCAPSD_BYDVR
    AccessioniPrimary (citable) accession number: Q00011
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 1, 1992
    Last sequence update: December 1, 1992
    Last modified: October 1, 2014
    This is version 46 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    The N-terminal region like those of many plant virus capsid proteins is highly basic. It has been suggested that these regions may be involved in protein-RNA interaction.

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3