Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q00011 (CAPSD_BYDVR) Reviewed, UniProtKB/Swiss-Prot

Last modified April 3, 2013. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Protein attributes

Sequence length200 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Major capsid protein.

Subcellular location

Virion Potential.

Miscellaneous

The N-terminal region like those of many plant virus capsid proteins is highly basic. It has been suggested that these regions may be involved in protein-RNA interaction.

Sequence similarities

Belongs to the luteoviruses capsid protein family.

Ontologies

Keywords
   Cellular componentCapsid protein
T=3 icosahedral capsid protein
Virion
Gene Ontology (GO)
   Cellular_componentT=3 icosahedral viral capsid

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural molecule activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 200200Major capsid protein
PRO_0000222409

Regions

Compositional bias6 – 4843Arg-rich
Compositional bias28 – 314Poly-Val

Natural variations

Natural variant1241F → L.

Sequences

Sequence LengthMass (Da)Tools
Q00011 [UniParc].

Last modified December 1, 1992. Version 1.
Checksum: 4E667612BEC54020

FASTA20021,978
        10         20         30         40         50         60 
MNSVGRRGPR RANQNGTRRR RRRTVRPVVV VQPNRAGPRR RNGRRKGRGG ANPVFRPTGG 

        70         80         90        100        110        120 
TEVFVFSVDN LKANSSGAIK FGPSLSQCPA LSDGILKSYH RYKITSIRVE FKSHASATTA 

       130        140        150        160        170        180 
GAIFIELDTA CKQSALGSYI NSFTISRTAA KVFRAEAING KEFQESTIDQ FWMLYKANGT 

       190        200 
TTDTAGQFII TMSVSLMTAK 

« Hide

References

[1]"Nucleotide sequences of coat protein genes for three isolates of barley yellow dwarf virus and their relationships to other luteovirus coat protein sequences."
Vincent J.R., Ueng P.P., Lister R.M., Larkins B.A.
J. Gen. Virol. 71:2791-2799(1990) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
[2]"Nucleotide sequence analysis of the genomes of the MAV-PS1 and P-PAV isolates of barley yellow dwarf virus."
Ueng P.P., Vincent J.R., Kawata E.E., Lei C.H., Lister R.M., Larkins B.A.
J. Gen. Virol. 73:487-492(1992) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X17261 Genomic RNA. Translation: CAA35164.1.
D11032 Genomic RNA. Translation: BAA01787.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR001517. Luteo_coat.
[Graphical view]
PfamPF00894. Luteo_coat. 1 hit.
[Graphical view]
PRINTSPR00915. LUTEOGP1COAT.
ProtoNetSearch...

Entry information

Entry nameCAPSD_BYDVR
AccessionPrimary (citable) accession number: Q00011
Entry history
Integrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: December 1, 1992
Last modified: April 3, 2013
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families