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Protein

50S ribosomal protein L13

Gene

rplM

Organism
Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

GO - Biological processi

  • growth Source: MTBBASE
  • translation Source: GO_Central

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rplMUniRule annotation
Ordered Locus Names:Rv3443c
ORF Names:MTCY77.15c
OrganismiMycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Taxonomic identifieri83332 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycobacteriumMycobacterium tuberculosis complex
Proteomesi
  • UP000001584 Componenti: Chromosome

Organism-specific databases

TubercuListiRv3443c.

Subcellular locationi

GO - Cellular componenti

  • cell wall Source: MTBBASE
  • cytosol Source: MTBBASE
  • cytosolic large ribosomal subunit Source: GO_Central
  • plasma membrane Source: MTBBASE

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001337441 – 14750S ribosomal protein L13Add BLAST147

Proteomic databases

PaxDbiP9WHE1.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi83332.Rv3443c.

Structurei

3D structure databases

ProteinModelPortaliP9WHE1.
SMRiP9WHE1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108UM5. Bacteria.
COG0102. LUCA.
KOiK02871.
OMAiVLMGKHK.
PhylomeDBiP9WHE1.

Family and domain databases

CDDicd00392. Ribosomal_L13. 1 hit.
Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13. 1 hit.
InterProiView protein in InterPro
IPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
PANTHERiPTHR11545. PTHR11545. 1 hit.
PfamiView protein in Pfam
PF00572. Ribosomal_L13. 1 hit.
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01066. rplM_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00783. RIBOSOMAL_L13. 1 hit.

Sequencei

Sequence statusi: Complete.

P9WHE1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPTYAPKAGD TTRSWYVIDA TDVVLGRLAV AAANLLRGKH KPTFAPNVDG
60 70 80 90 100
GDFVIVINAD KVAISGDKLQ HKMVYRHSGY PGGLHKRTIG ELMQRHPDRV
110 120 130 140
VEKAILGMLP KNRLSRQIQR KLRVYAGPEH PHSAQQPVPY ELKQVAQ
Length:147
Mass (Da):16,337
Last modified:April 16, 2014 - v1
Checksum:i0D2DB2622D62B626
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL123456 Genomic DNA. Translation: CCP46265.1.
PIRiA70977.
RefSeqiNP_217960.1. NC_000962.3.
WP_003418312.1. NZ_KK339370.1.

Genome annotation databases

EnsemblBacteriaiCCP46265; CCP46265; Rv3443c.
GeneIDi887584.
KEGGimtu:Rv3443c.

Similar proteinsi

Entry informationi

Entry nameiRL13_MYCTU
AccessioniPrimary (citable) accession number: P9WHE1
Secondary accession number(s): L0TFM7, O06260, P66065
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 16, 2014
Last sequence update: April 16, 2014
Last modified: June 7, 2017
This is version 25 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Mycobacterium tuberculosis strains ATCC 25618 / H37Rv and CDC 1551 / Oshkosh
    Mycobacterium tuberculosis strains ATCC 25618 / H37Rv and CDC 1551 / Oshkosh: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families