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P97946

- VEGFD_MOUSE

UniProt

P97946 - VEGFD_MOUSE

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Protein
Vascular endothelial growth factor D
Gene
Figf, Vegfd
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at transcript leveli

Functioni

Growth factor active in angiogenesis, lymphangiogenesis and endothelial cell growth, stimulating their proliferation and migration and also has effects on the permeability of blood vessels. May function in the formation of the venous and lymphatic vascular systems during embryogenesis, and also in the maintenance of differentiated lymphatic endothelium in adults. Binds and activates VEGFR-3 (Flt4) receptor.

GO - Molecular functioni

  1. chemoattractant activity Source: Ensembl
  2. growth factor activity Source: MGI
  3. protein binding Source: MGI
  4. protein homodimerization activity Source: MGI
  5. vascular endothelial growth factor receptor 3 binding Source: MGI

GO - Biological processi

  1. angiogenesis Source: UniProtKB-KW
  2. cell differentiation Source: UniProtKB-KW
  3. cell proliferation Source: MGI
  4. induction of positive chemotaxis Source: Ensembl
  5. positive regulation of cell division Source: UniProtKB-KW
  6. positive regulation of cell proliferation Source: MGI
  7. positive regulation of mast cell chemotaxis Source: Ensembl
  8. vascular endothelial growth factor receptor signaling pathway Source: MGI
Complete GO annotation...

Keywords - Molecular functioni

Developmental protein, Growth factor, Mitogen

Keywords - Biological processi

Angiogenesis, Differentiation

Enzyme and pathway databases

ReactomeiREACT_205099. VEGF binds to VEGFR leading to receptor dimerization.
REACT_224551. VEGF ligand-receptor interactions.

Names & Taxonomyi

Protein namesi
Recommended name:
Vascular endothelial growth factor D
Short name:
VEGF-D
Alternative name(s):
c-Fos-induced growth factor
Short name:
FIGF
Gene namesi
Name:Figf
Synonyms:Vegfd
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome X

Organism-specific databases

MGIiMGI:108037. Figf.

Subcellular locationi

GO - Cellular componenti

  1. extracellular region Source: MGI
  2. extracellular space Source: MGI
  3. membrane Source: InterPro
Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121 Reviewed prediction
Add
BLAST
Propeptidei22 – 9372 Reviewed prediction
PRO_0000023411Add
BLAST
Chaini94 – 210117Vascular endothelial growth factor D
PRO_0000023412Add
BLAST
Propeptidei211 – 358148 Reviewed prediction
PRO_0000023413Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi116 ↔ 158 By similarity
Disulfide bondi141 – 141Interchain By similarity
Disulfide bondi147 ↔ 194 By similarity
Disulfide bondi150 – 150Interchain By similarity
Disulfide bondi151 ↔ 196 By similarity
Glycosylationi160 – 1601N-linked (GlcNAc...) Reviewed prediction
Glycosylationi190 – 1901N-linked (GlcNAc...) Reviewed prediction
Glycosylationi292 – 2921N-linked (GlcNAc...) Reviewed prediction

Post-translational modificationi

Undergoes a complex proteolytic maturation which generates a variety of processed secreted forms with increased activity toward VEGFR-3 and VEGFR-2. VEGF-D first form an antiparallel homodimer linked by disulfide bonds before secretion. The fully processed VEGF-D is composed mostly of two VEGF homology domains (VHDs) bound by non-covalent interactions By similarity.

Keywords - PTMi

Cleavage on pair of basic residues, Disulfide bond, Glycoprotein

Proteomic databases

PRIDEiP97946.

PTM databases

PhosphoSiteiP97946.

Expressioni

Tissue specificityi

Highly expressed in fetal and adult lung.

Developmental stagei

Expressed in a dynamic pattern in several body structures and organs of the embryo such as limb buds, acoustic ganglion, teeth, heart, anterior pituitary as well as lung and kidney mesenchyme, liver, derma, and periosteum of the vertebral column.1 Publication

Inductioni

By the transcription factor c-fos.

Gene expression databases

BgeeiP97946.
CleanExiMM_FIGF.
GenevestigatoriP97946.

Interactioni

Subunit structurei

Homodimer; non-covalent and antiparallel.

Protein-protein interaction databases

BioGridi199673. 2 interactions.
STRINGi10090.ENSMUSP00000033751.

Structurei

3D structure databases

ProteinModelPortaliP97946.
SMRiP97946. Positions 97-199.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati227 – 242161; approximate
Add
BLAST
Repeati263 – 278162
Add
BLAST
Repeati282 – 298173
Add
BLAST
Repeati306 – 323184
Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni227 – 323974 X 16 AA repeats of C-X(10)-C-X-C-X(1,3)-C
Add
BLAST

Sequence similaritiesi

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

eggNOGiNOG77707.
GeneTreeiENSGT00730000110889.
HOGENOMiHOG000231512.
HOVERGENiHBG073119.
InParanoidiA2AIH3.
KOiK05449.
OMAiDTCSCED.
OrthoDBiEOG7J17ZS.
PhylomeDBiP97946.
TreeFamiTF319554.

Family and domain databases

Gene3Di2.10.90.10. 1 hit.
InterProiIPR029034. Cystine-knot_cytokine.
IPR023581. PD_growth_factor_CS.
IPR000072. PDGF/VEGF_dom.
[Graphical view]
PfamiPF00341. PDGF. 1 hit.
[Graphical view]
SMARTiSM00141. PDGF. 1 hit.
[Graphical view]
SUPFAMiSSF57501. SSF57501. 1 hit.
PROSITEiPS00249. PDGF_1. 1 hit.
PS50278. PDGF_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P97946-1 [UniParc]FASTAAdd to Basket

« Hide

MYGEWGMGNI LMMFHVYLVQ GFRSEHGPVK DFSFERSSRS MLERSEQQIR    50
AASSLEELLQ IAHSEDWKLW RCRLKLKSLA SMDSRSASHR STRFAATFYD 100
TETLKVIDEE WQRTQCSPRE TCVEVASELG KTTNTFFKPP CVNVFRCGGC 150
CNEEGVMCMN TSTSYISKQL FEISVPLTSV PELVPVKIAN HTGCKCLPTG 200
PRHPYSIIRR SIQTPEEDEC PHSKKLCPID MLWDNTKCKC VLQDETPLPG 250
TEDHSYLQEP TLCGPHMTFD EDRCECVCKA PCPGDLIQHP ENCSCFECKE 300
SLESCCQKHK IFHPDTCSCE DRCPFHTRTC ASRKPACGKH WRFPKETRAQ 350
GLYSQENP 358
Length:358
Mass (Da):40,909
Last modified:May 1, 1997 - v1
Checksum:i6636B17FBF07037C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X99572 mRNA. Translation: CAA67892.1.
D89628 mRNA. Translation: BAA14002.1.
AL732475 Genomic DNA. Translation: CAM17370.1.
BC080770 mRNA. Translation: AAH80770.1.
CCDSiCCDS30521.1.
RefSeqiNP_034346.1. NM_010216.1.
XP_006528763.1. XM_006528700.1.
UniGeneiMm.297978.

Genome annotation databases

EnsembliENSMUST00000033751; ENSMUSP00000033751; ENSMUSG00000031380.
GeneIDi14205.
KEGGimmu:14205.
UCSCiuc009uvm.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X99572 mRNA. Translation: CAA67892.1 .
D89628 mRNA. Translation: BAA14002.1 .
AL732475 Genomic DNA. Translation: CAM17370.1 .
BC080770 mRNA. Translation: AAH80770.1 .
CCDSi CCDS30521.1.
RefSeqi NP_034346.1. NM_010216.1.
XP_006528763.1. XM_006528700.1.
UniGenei Mm.297978.

3D structure databases

ProteinModelPortali P97946.
SMRi P97946. Positions 97-199.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 199673. 2 interactions.
STRINGi 10090.ENSMUSP00000033751.

PTM databases

PhosphoSitei P97946.

Proteomic databases

PRIDEi P97946.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000033751 ; ENSMUSP00000033751 ; ENSMUSG00000031380 .
GeneIDi 14205.
KEGGi mmu:14205.
UCSCi uc009uvm.1. mouse.

Organism-specific databases

CTDi 2277.
MGIi MGI:108037. Figf.

Phylogenomic databases

eggNOGi NOG77707.
GeneTreei ENSGT00730000110889.
HOGENOMi HOG000231512.
HOVERGENi HBG073119.
InParanoidi A2AIH3.
KOi K05449.
OMAi DTCSCED.
OrthoDBi EOG7J17ZS.
PhylomeDBi P97946.
TreeFami TF319554.

Enzyme and pathway databases

Reactomei REACT_205099. VEGF binds to VEGFR leading to receptor dimerization.
REACT_224551. VEGF ligand-receptor interactions.

Miscellaneous databases

NextBioi 285450.
PROi P97946.
SOURCEi Search...

Gene expression databases

Bgeei P97946.
CleanExi MM_FIGF.
Genevestigatori P97946.

Family and domain databases

Gene3Di 2.10.90.10. 1 hit.
InterProi IPR029034. Cystine-knot_cytokine.
IPR023581. PD_growth_factor_CS.
IPR000072. PDGF/VEGF_dom.
[Graphical view ]
Pfami PF00341. PDGF. 1 hit.
[Graphical view ]
SMARTi SM00141. PDGF. 1 hit.
[Graphical view ]
SUPFAMi SSF57501. SSF57501. 1 hit.
PROSITEi PS00249. PDGF_1. 1 hit.
PS50278. PDGF_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Identification of a c-fos-induced gene that is related to the platelet-derived growth factor/vascular endothelial growth factor family."
    Orlandini M., Marconcini L., Ferruzzi R., Oliviero S.
    Proc. Natl. Acad. Sci. U.S.A. 93:11675-11680(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: C57BL/6J.
    Tissue: Fibroblast.
  2. "Molecular cloning of a novel vascular endothelial growth factor, VEGF-D."
    Yamada Y., Nezu J., Shimane M., Hirata Y.
    Genomics 42:483-488(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Tissue: Lung.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Bone and Limb.
  5. "Embryonic expression pattern of the murine figf gene, a growth factor belonging to platelet-derived growth factor/vascular endothelial growth factor family."
    Avantaggiato V., Orlandini M., Acampora D., Oliviero S., Simeone A.
    Mech. Dev. 73:221-224(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: DEVELOPMENTAL STAGE.
  6. "The specificity of receptor binding by vascular endothelial growth factor-d is different in mouse and man."
    Baldwin M.E., Catimel B., Nice E.C., Roufail S., Hall N.E., Stenvers K.L., Karkkainen M.J., Alitalo K., Stacker S.A., Achen M.G.
    J. Biol. Chem. 276:19166-19171(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: RECEPTOR SPECIFICITY.

Entry informationi

Entry nameiVEGFD_MOUSE
AccessioniPrimary (citable) accession number: P97946
Secondary accession number(s): A2AIH3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 16, 2001
Last sequence update: May 1, 1997
Last modified: September 3, 2014
This is version 118 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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