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P97333

- NRP1_MOUSE

UniProt

P97333 - NRP1_MOUSE

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Protein
Neuropilin-1
Gene
Nrp1, Nrp
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Receptor involved in the development of the cardiovascular system, in angiogenesis, in the formation of certain neuronal circuits and in organogenesis outside the nervous system. It mediates the chemorepulsant activity of semaphorins. It binds to semaphorin 3A, the PLGF-2 isoform of PGF, the VEGF-165 isoform of VEGF and VEGF-B. Coexpression with KDR results in increased VEGF-165 binding to KDR as well as increased chemotaxis. It may regulate VEGF-induced angiogenesis By similarity.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi195 – 1951Calcium By similarity
Metal bindingi209 – 2091Calcium By similarity
Metal bindingi250 – 2501Calcium By similarity

GO - Molecular functioni

  1. growth factor binding Source: MGI
  2. heparin binding Source: UniProtKB-KW
  3. metal ion binding Source: UniProtKB-KW
  4. protein binding Source: IntAct
  5. semaphorin receptor activity Source: MGI
  6. vascular endothelial growth factor binding Source: BHF-UCL
  7. vascular endothelial growth factor-activated receptor activity Source: BHF-UCL

GO - Biological processi

  1. VEGF-activated neuropilin signaling pathway Source: BHF-UCL
  2. VEGF-activated neuropilin signaling pathway involved in axon guidance Source: BHF-UCL
  3. angiogenesis Source: BHF-UCL
  4. angiogenesis involved in coronary vascular morphogenesis Source: BHF-UCL
  5. artery morphogenesis Source: BHF-UCL
  6. axon extension involved in axon guidance Source: BHF-UCL
  7. axon guidance Source: MGI
  8. axonal fasciculation Source: MGI
  9. axonogenesis involved in innervation Source: BHF-UCL
  10. branchiomotor neuron axon guidance Source: ParkinsonsUK-UCL
  11. cell adhesion Source: InterPro
  12. cell migration Source: MGI
  13. cell migration involved in coronary vasculogenesis Source: BHF-UCL
  14. cell migration involved in sprouting angiogenesis Source: BHF-UCL
  15. cellular response to hepatocyte growth factor stimulus Source: Ensembl
  16. cellular response to vascular endothelial growth factor stimulus Source: BHF-UCL
  17. commissural neuron axon guidance Source: BHF-UCL
  18. coronary artery morphogenesis Source: BHF-UCL
  19. dendrite development Source: MGI
  20. dichotomous subdivision of terminal units involved in salivary gland branching Source: MGI
  21. endothelial cell chemotaxis Source: Ensembl
  22. facial nerve structural organization Source: ParkinsonsUK-UCL
  23. gonadotrophin-releasing hormone neuronal migration to the hypothalamus Source: BHF-UCL
  24. heart development Source: MGI
  25. hepatocyte growth factor receptor signaling pathway Source: Ensembl
  26. motor neuron axon guidance Source: ParkinsonsUK-UCL
  27. negative regulation of axon extension Source: MGI
  28. negative regulation of axon extension involved in axon guidance Source: MGI
  29. negative regulation of extrinsic apoptotic signaling pathway Source: BHF-UCL
  30. negative regulation of neuron apoptotic process Source: BHF-UCL
  31. nerve development Source: BHF-UCL
  32. neural crest cell migration involved in autonomic nervous system development Source: BHF-UCL
  33. neuron development Source: BHF-UCL
  34. neuron migration Source: BHF-UCL
  35. organ morphogenesis Source: InterPro
  36. patterning of blood vessels Source: BHF-UCL
  37. platelet-derived growth factor receptor signaling pathway Source: Ensembl
  38. positive chemotaxis Source: BHF-UCL
  39. positive regulation of ERK1 and ERK2 cascade Source: BHF-UCL
  40. positive regulation of axon extension involved in axon guidance Source: BHF-UCL
  41. positive regulation of peptidyl-tyrosine phosphorylation Source: BHF-UCL
  42. positive regulation of retinal ganglion cell axon guidance Source: BHF-UCL
  43. protein localization to early endosome Source: BHF-UCL
  44. regulation of axon extension involved in axon guidance Source: MGI
  45. regulation of retinal ganglion cell axon guidance Source: BHF-UCL
  46. renal artery morphogenesis Source: BHF-UCL
  47. response to wounding Source: Ensembl
  48. retina vasculature morphogenesis in camera-type eye Source: BHF-UCL
  49. retinal ganglion cell axon guidance Source: BHF-UCL
  50. semaphorin-plexin signaling pathway Source: MGI
  51. semaphorin-plexin signaling pathway involved in axon guidance Source: ParkinsonsUK-UCL
  52. semaphorin-plexin signaling pathway involved in neuron projection guidance Source: BHF-UCL
  53. sprouting angiogenesis Source: BHF-UCL
  54. sympathetic ganglion development Source: BHF-UCL
  55. sympathetic nervous system development Source: MGI
  56. sympathetic neuron projection extension Source: BHF-UCL
  57. sympathetic neuron projection guidance Source: BHF-UCL
  58. trigeminal nerve morphogenesis Source: MGI
  59. trigeminal nerve structural organization Source: ParkinsonsUK-UCL
  60. vascular endothelial growth factor receptor signaling pathway Source: BHF-UCL
Complete GO annotation...

Keywords - Molecular functioni

Developmental protein, Receptor

Keywords - Biological processi

Angiogenesis, Differentiation, Neurogenesis

Keywords - Ligandi

Calcium, Heparin-binding, Metal-binding

Enzyme and pathway databases

ReactomeiREACT_198267. CHL1 interactions.
REACT_215461. Signal transduction by L1.
REACT_227870. Neurophilin interactions with VEGF and VEGFR.

Names & Taxonomyi

Protein namesi
Recommended name:
Neuropilin-1
Alternative name(s):
A5 protein
CD_antigen: CD304
Gene namesi
Name:Nrp1
Synonyms:Nrp
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 8

Organism-specific databases

MGIiMGI:106206. Nrp1.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini22 – 856835Extracellular Reviewed prediction
Add
BLAST
Transmembranei857 – 87923Helical; Reviewed prediction
Add
BLAST
Topological domaini880 – 92344Cytoplasmic Reviewed prediction
Add
BLAST

GO - Cellular componenti

  1. axon Source: BHF-UCL
  2. cell surface Source: Ensembl
  3. cytosol Source: Ensembl
  4. early endosome Source: BHF-UCL
  5. growth cone Source: Ensembl
  6. integral component of membrane Source: UniProtKB-KW
  7. neurofilament Source: MGI
  8. neuronal cell body Source: Ensembl
  9. plasma membrane Source: BHF-UCL
  10. sorting endosome Source: BHF-UCL
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121 Reviewed prediction
Add
BLAST
Chaini22 – 923902Neuropilin-1
PRO_0000021860Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi27 ↔ 54 Inferred
Disulfide bondi82 ↔ 104 Inferred
Disulfide bondi147 ↔ 173 By similarity
Glycosylationi150 – 1501N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi206 ↔ 228 By similarity
Glycosylationi261 – 2611N-linked (GlcNAc...)1 Publication
Disulfide bondi275 ↔ 424 By similarity
Glycosylationi300 – 3001N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi431 ↔ 583 By similarity
Glycosylationi522 – 5221N-linked (GlcNAc...)1 Publication
Glycosylationi612 – 6121O-linked (Xyl...) (chondroitin sulfate); alternate By similarity
Glycosylationi612 – 6121O-linked (Xyl...) (heparan sulfate); alternate By similarity
Glycosylationi842 – 8421N-linked (GlcNAc...) Reviewed prediction

Keywords - PTMi

Disulfide bond, Glycoprotein, Heparan sulfate, Proteoglycan

Proteomic databases

MaxQBiP97333.
PaxDbiP97333.
PRIDEiP97333.

PTM databases

PhosphoSiteiP97333.

Expressioni

Tissue specificityi

Nervous system.

Gene expression databases

ArrayExpressiP97333.
BgeeiP97333.
CleanExiMM_NRP1.
GenevestigatoriP97333.

Interactioni

Subunit structurei

Homodimer, and heterodimer with NRP2. Binds PLXNB1 By similarity. Interacts with FER.1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
Ptk2P341522EBI-1555129,EBI-77070

Protein-protein interaction databases

BioGridi201848. 5 interactions.
DIPiDIP-39360N.
IntActiP97333. 12 interactions.
MINTiMINT-99860.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi27 – 326
Beta strandi37 – 404
Turni42 – 465
Beta strandi53 – 597
Beta strandi67 – 715
Helixi80 – 823
Beta strandi84 – 9411
Beta strandi97 – 1037
Beta strandi105 – 1073
Beta strandi115 – 12410
Beta strandi135 – 1406
Beta strandi146 – 1516
Beta strandi153 – 1597
Turni161 – 1644
Beta strandi172 – 1787
Helixi180 – 1823
Beta strandi185 – 1939
Beta strandi208 – 21710
Turni218 – 2203
Beta strandi223 – 2275
Beta strandi229 – 2313
Beta strandi236 – 2383
Beta strandi240 – 2489
Beta strandi257 – 2648
Turni281 – 2833
Beta strandi284 – 2863
Helixi288 – 2903
Beta strandi291 – 2944
Helixi299 – 3013
Helixi303 – 3053
Beta strandi326 – 34217
Turni347 – 3493
Beta strandi352 – 36817
Beta strandi373 – 3786
Beta strandi385 – 3895
Beta strandi391 – 41424
Beta strandi417 – 4248
Helixi426 – 4283
Beta strandi429 – 4313
Turni437 – 4393
Beta strandi440 – 4423
Helixi444 – 4463
Beta strandi447 – 4493
Turni450 – 4534
Helixi459 – 4624
Turni464 – 4663
Beta strandi471 – 4733
Beta strandi485 – 50117
Beta strandi503 – 5075
Beta strandi512 – 52514
Beta strandi534 – 5374
Beta strandi544 – 5474
Beta strandi550 – 57021
Beta strandi573 – 58311

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4GZ9X-ray2.70A22-586[»]
4GZAX-ray7.00H22-586[»]
ProteinModelPortaliP97333.
SMRiP97333. Positions 25-586, 681-801.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini27 – 141115CUB 1
Add
BLAST
Domaini147 – 265119CUB 2
Add
BLAST
Domaini275 – 424150F5/8 type C 1
Add
BLAST
Domaini431 – 583153F5/8 type C 2
Add
BLAST
Domaini645 – 811167MAM
Add
BLAST

Domaini

The tandem CUB domains mediate binding to semaphorin, while the tandem F5/8 domains are responsible for heparin and VEGF binding By similarity.

Sequence similaritiesi

Belongs to the neuropilin family.
Contains 2 CUB domains.
Contains 2 F5/8 type C domains.
Contains 1 MAM domain.

Keywords - Domaini

Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG150941.
GeneTreeiENSGT00740000115053.
HOGENOMiHOG000039978.
HOVERGENiHBG000502.
InParanoidiQ6PAR3.
KOiK06724.
OMAiYCACWHN.
OrthoDBiEOG7ZWD1D.
TreeFamiTF316506.

Family and domain databases

Gene3Di2.60.120.260. 2 hits.
2.60.120.290. 2 hits.
InterProiIPR000421. Coagulation_fac_5/8-C_type_dom.
IPR008985. ConA-like_lec_gl_sf.
IPR000859. CUB_dom.
IPR008979. Galactose-bd-like.
IPR000998. MAM_dom.
IPR014648. Neuropilin.
IPR022579. Neuropilin1_C.
IPR027146. NRP1.
[Graphical view]
PANTHERiPTHR10127:SF616. PTHR10127:SF616. 1 hit.
PfamiPF00431. CUB. 2 hits.
PF11980. DUF3481. 1 hit.
PF00754. F5_F8_type_C. 2 hits.
PF00629. MAM. 1 hit.
[Graphical view]
PIRSFiPIRSF036960. Neuropilin. 1 hit.
PRINTSiPR00020. MAMDOMAIN.
SMARTiSM00042. CUB. 2 hits.
SM00231. FA58C. 2 hits.
SM00137. MAM. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 2 hits.
SSF49854. SSF49854. 2 hits.
SSF49899. SSF49899. 1 hit.
PROSITEiPS01180. CUB. 2 hits.
PS01285. FA58C_1. 2 hits.
PS01286. FA58C_2. 2 hits.
PS50022. FA58C_3. 2 hits.
PS00740. MAM_1. 1 hit.
PS50060. MAM_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P97333-1 [UniParc]FASTAAdd to Basket

« Hide

MERGLPLLCA TLALALALAG AFRSDKCGGT IKIENPGYLT SPGYPHSYHP    50
SEKCEWLIQA PEPYQRIMIN FNPHFDLEDR DCKYDYVEVI DGENEGGRLW 100
GKFCGKIAPS PVVSSGPFLF IKFVSDYETH GAGFSIRYEI FKRGPECSQN 150
YTAPTGVIKS PGFPEKYPNS LECTYIIFAP KMSEIILEFE SFDLEQDSNP 200
PGGMFCRYDR LEIWDGFPEV GPHIGRYCGQ KTPGRIRSSS GVLSMVFYTD 250
SAIAKEGFSA NYSVLQSSIS EDFKCMEALG MESGEIHSDQ ITASSQYGTN 300
WSVERSRLNY PENGWTPGED SYKEWIQVDL GLLRFVTAVG TQGAISKETK 350
KKYYVKTYRV DISSNGEDWI SLKEGNKAII FQGNTNPTDV VLGVFSKPLI 400
TRFVRIKPVS WETGISMRFE VYGCKITDYP CSGMLGMVSG LISDSQITAS 450
NQADRNWMPE NIRLVTSRTG WALPPSPHPY TNEWLQVDLG DEKIVRGVII 500
QGGKHRENKV FMRKFKIAYS NNGSDWKTIM DDSKRKAKSF EGNNNYDTPE 550
LRTFSPLSTR FIRIYPERAT HSGLGLRMEL LGCEVEAPTA GPTTPNGNPV 600
DECDDDQANC HSGTGDDFQL TGGTTVLATE KPTIIDSTIQ SEFPTYGFNC 650
EFGWGSHKTF CHWEHDSHAQ LRWSVLTSKT GPIQDHTGDG NFIYSQADEN 700
QKGKVARLVS PVVYSQSSAH CMTFWYHMSG SHVGTLRVKL RYQKPEEYDQ 750
LVWMVVGHQG DHWKEGRVLL HKSLKLYQVI FEGEIGKGNL GGIAVDDISI 800
NNHISQEDCA KPTDLDKKNT EIKIDETGST PGYEGEGEGD KNISRKPGNV 850
LKTLDPILIT IIAMSALGVL LGAVCGVVLY CACWHNGMSE RNLSALENYN 900
FELVDGVKLK KDKLNPQSNY SEA 923
Length:923
Mass (Da):103,000
Last modified:July 27, 2011 - v2
Checksum:i23209818C5C42137
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti68 – 681M → I in BAA08789. 1 Publication
Sequence conflicti170 – 1701S → C in BAA08789. 1 Publication
Sequence conflicti601 – 6011D → H in BAA08789. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
D50086 mRNA. Translation: BAA08789.1.
CH466525 Genomic DNA. Translation: EDL11828.1.
BC060129 mRNA. Translation: AAH60129.1.
CCDSiCCDS22790.1.
RefSeqiNP_032763.2. NM_008737.2.
XP_006530829.1. XM_006530766.1.
UniGeneiMm.271745.

Genome annotation databases

EnsembliENSMUST00000026917; ENSMUSP00000026917; ENSMUSG00000025810.
GeneIDi18186.
KEGGimmu:18186.
UCSCiuc009nzr.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
D50086 mRNA. Translation: BAA08789.1 .
CH466525 Genomic DNA. Translation: EDL11828.1 .
BC060129 mRNA. Translation: AAH60129.1 .
CCDSi CCDS22790.1.
RefSeqi NP_032763.2. NM_008737.2.
XP_006530829.1. XM_006530766.1.
UniGenei Mm.271745.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4GZ9 X-ray 2.70 A 22-586 [» ]
4GZA X-ray 7.00 H 22-586 [» ]
ProteinModelPortali P97333.
SMRi P97333. Positions 25-586, 681-801.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 201848. 5 interactions.
DIPi DIP-39360N.
IntActi P97333. 12 interactions.
MINTi MINT-99860.

PTM databases

PhosphoSitei P97333.

Proteomic databases

MaxQBi P97333.
PaxDbi P97333.
PRIDEi P97333.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000026917 ; ENSMUSP00000026917 ; ENSMUSG00000025810 .
GeneIDi 18186.
KEGGi mmu:18186.
UCSCi uc009nzr.2. mouse.

Organism-specific databases

CTDi 8829.
MGIi MGI:106206. Nrp1.

Phylogenomic databases

eggNOGi NOG150941.
GeneTreei ENSGT00740000115053.
HOGENOMi HOG000039978.
HOVERGENi HBG000502.
InParanoidi Q6PAR3.
KOi K06724.
OMAi YCACWHN.
OrthoDBi EOG7ZWD1D.
TreeFami TF316506.

Enzyme and pathway databases

Reactomei REACT_198267. CHL1 interactions.
REACT_215461. Signal transduction by L1.
REACT_227870. Neurophilin interactions with VEGF and VEGFR.

Miscellaneous databases

ChiTaRSi NRP1. mouse.
NextBioi 293506.
PROi P97333.
SOURCEi Search...

Gene expression databases

ArrayExpressi P97333.
Bgeei P97333.
CleanExi MM_NRP1.
Genevestigatori P97333.

Family and domain databases

Gene3Di 2.60.120.260. 2 hits.
2.60.120.290. 2 hits.
InterProi IPR000421. Coagulation_fac_5/8-C_type_dom.
IPR008985. ConA-like_lec_gl_sf.
IPR000859. CUB_dom.
IPR008979. Galactose-bd-like.
IPR000998. MAM_dom.
IPR014648. Neuropilin.
IPR022579. Neuropilin1_C.
IPR027146. NRP1.
[Graphical view ]
PANTHERi PTHR10127:SF616. PTHR10127:SF616. 1 hit.
Pfami PF00431. CUB. 2 hits.
PF11980. DUF3481. 1 hit.
PF00754. F5_F8_type_C. 2 hits.
PF00629. MAM. 1 hit.
[Graphical view ]
PIRSFi PIRSF036960. Neuropilin. 1 hit.
PRINTSi PR00020. MAMDOMAIN.
SMARTi SM00042. CUB. 2 hits.
SM00231. FA58C. 2 hits.
SM00137. MAM. 1 hit.
[Graphical view ]
SUPFAMi SSF49785. SSF49785. 2 hits.
SSF49854. SSF49854. 2 hits.
SSF49899. SSF49899. 1 hit.
PROSITEi PS01180. CUB. 2 hits.
PS01285. FA58C_1. 2 hits.
PS01286. FA58C_2. 2 hits.
PS50022. FA58C_3. 2 hits.
PS00740. MAM_1. 1 hit.
PS50060. MAM_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Developmentally regulated expression of a cell surface protein, neuropilin, in the mouse nervous system."
    Kawakami A., Kitsukawa T., Takagi S., Fujisawa H.
    J. Neurobiol. 29:1-17(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: BALB/c.
    Tissue: Embryonic brain.
  2. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
    Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6.
    Tissue: Brain.
  4. "The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation."
    Gundry R.L., Raginski K., Tarasova Y., Tchernyshyov I., Bausch-Fluck D., Elliott S.T., Boheler K.R., Van Eyk J.E., Wollscheid B.
    Mol. Cell. Proteomics 8:2555-2569(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-261 AND ASN-522.
    Tissue: Myoblast.
  5. "Neuropilin 1 directly interacts with Fer kinase to mediate semaphorin 3A-induced death of cortical neurons."
    Jiang S.X., Whitehead S., Aylsworth A., Slinn J., Zurakowski B., Chan K., Li J., Hou S.T.
    J. Biol. Chem. 285:9908-9918(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH FER.

Entry informationi

Entry nameiNRP1_MOUSE
AccessioniPrimary (citable) accession number: P97333
Secondary accession number(s): Q6PAR3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: July 27, 2011
Last modified: September 3, 2014
This is version 141 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi