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Protein
Submitted name:

Xylanase

Gene
N/A
Organism
Rhodothermus marinus (Rhodothermus obamensis)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Carbohydrate metabolism, Polysaccharide degradation, Xylan degradationImported

Enzyme and pathway databases

BRENDAi3.2.1.8. 5425.

Protein family/group databases

CAZyiCBM4. Carbohydrate-Binding Module Family 4.
GH10. Glycoside Hydrolase Family 10.

Names & Taxonomyi

Protein namesi
Submitted name:
XylanaseImported
OrganismiRhodothermus marinus (Rhodothermus obamensis)Imported
Taxonomic identifieri29549 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidetes Order II. Incertae sedisRhodothermaceaeRhodothermus

Interactioni

Protein-protein interaction databases

STRINGi518766.Rmar_1069.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1K42NMR-A211-373[»]
1K45NMR-A211-373[»]
ProteinModelPortaliP96988.
SMRiP96988.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP96988.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 307GH10 (glycosyl hydrolase family 10)InterPro annotationAdd BLAST307

Phylogenomic databases

eggNOGiENOG4105VYD. Bacteria.
COG3693. LUCA.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR001000. GH10.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR026444. Secre_tail.
[Graphical view]
PfamiPF00331. Glyco_hydro_10. 1 hit.
[Graphical view]
SMARTiSM00633. Glyco_10. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
TIGRFAMsiTIGR04183. Por_Secre_tail. 1 hit.
PROSITEiPS51760. GH10_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

P96988-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
AADVDKFLGN IYSPSQVENF EYYWNCVTPE NAGKWGSVEG TRDQMNWSSL
60 70 80 90 100
DAAYALARDN GFCFNFHVLL WGAQQPAWIS ELSPEEQLEE IQEWFQAVAE
110 120 130 140 150
RYSFTASPFD VVQVVNEPLH QPPDGQEGRA NYIEALGGAG ETGWDWVITA
160 170 180 190 200
FELARQIFPE GTRLMINDYG ILSSLETAQQ YLELIQLLKE RNLIDVIGVQ
210 220 230 240 250
GHAFSTRSGA PIQEVLDLLA TTGLPIQVTE MDIDGNPNQS PFVTREQSEQ
260 270 280 290 300
NQLRDMQRIF PTVWYHPAVE GVTFWGWRPG LWRNDYEAYL VYSNGAERPA
310 320 330 340 350
MVWLREFMEA YRESYLSANE PEGTLPEELS VVSWPNPSRG QVRFRYALPF
360 370 380 390 400
EAEVRLQVFD VLGREVMTLA SGRHRAGVYE VAFDGRHLPS GLYLYRLEAN
410
GRVRSGRLVL MR
Length:412
Mass (Da):46,982
Last modified:June 1, 2003 - v2
Checksum:iEBA74A6812B43625
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X87417 Genomic DNA. Translation: CAA60868.2.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X87417 Genomic DNA. Translation: CAA60868.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1K42NMR-A211-373[»]
1K45NMR-A211-373[»]
ProteinModelPortaliP96988.
SMRiP96988.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi518766.Rmar_1069.

Protein family/group databases

CAZyiCBM4. Carbohydrate-Binding Module Family 4.
GH10. Glycoside Hydrolase Family 10.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG4105VYD. Bacteria.
COG3693. LUCA.

Enzyme and pathway databases

BRENDAi3.2.1.8. 5425.

Miscellaneous databases

EvolutionaryTraceiP96988.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR001000. GH10.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR026444. Secre_tail.
[Graphical view]
PfamiPF00331. Glyco_hydro_10. 1 hit.
[Graphical view]
SMARTiSM00633. Glyco_10. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
TIGRFAMsiTIGR04183. Por_Secre_tail. 1 hit.
PROSITEiPS51760. GH10_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiP96988_RHOMR
AccessioniPrimary (citable) accession number: P96988
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 1997
Last sequence update: June 1, 2003
Last modified: November 2, 2016
This is version 73 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.