Skip Header

 
Contribute Send feedback
Read comments (1) or add your own

Unreviewed, UniProtKB/TrEMBL P96988 (P96988_RHOMR)

Last modified June 16, 2009. Version 41. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information

Names and origin

Protein namesSubmitted name:
    Xylanase EMBL CAA60868.2
OrganismRhodothermus marinus (Rhodothermus obamensis) EMBL CAA60868.2
Taxonomic identifier29549 [NCBI]
Taxonomic lineageBacteriaBacteroidetesSphingobacteriaSphingobacterialesRhodothermaceaeRhodothermus

Protein attributes

Sequence length412 AA.
Sequence statusFragment.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL CAA60868.2

Sequences

Sequence LengthMass (Da)Tools
P96988-1 [UniParc].

Last modified June 1, 2003. Version 2.
Checksum: EBA74A6812B43625

FASTA41246,982
        10         20         30         40         50         60 
AADVDKFLGN IYSPSQVENF EYYWNCVTPE NAGKWGSVEG TRDQMNWSSL DAAYALARDN 

        70         80         90        100        110        120 
GFCFNFHVLL WGAQQPAWIS ELSPEEQLEE IQEWFQAVAE RYSFTASPFD VVQVVNEPLH 

       130        140        150        160        170        180 
QPPDGQEGRA NYIEALGGAG ETGWDWVITA FELARQIFPE GTRLMINDYG ILSSLETAQQ 

       190        200        210        220        230        240 
YLELIQLLKE RNLIDVIGVQ GHAFSTRSGA PIQEVLDLLA TTGLPIQVTE MDIDGNPNQS 

       250        260        270        280        290        300 
PFVTREQSEQ NQLRDMQRIF PTVWYHPAVE GVTFWGWRPG LWRNDYEAYL VYSNGAERPA 

       310        320        330        340        350        360 
MVWLREFMEA YRESYLSANE PEGTLPEELS VVSWPNPSRG QVRFRYALPF EAEVRLQVFD 

       370        380        390        400        410 
VLGREVMTLA SGRHRAGVYE VAFDGRHLPS GLYLYRLEAN GRVRSGRLVL MR 

« Hide

References

[1]Nordberg Karlsson E.M.
Submitted (MAR-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DSM 4252 EMBL CAA60868.2.
[2]"The solution structure of the CBM4-2 carbohydrate binding module from a thermostable Rhodothermus marinus xylanase."
Simpson P.J., Jamieson S.J., Abou-Hachem M., Karlsson E.N., Gilbert H.J., Holst O., Williamson M.P.
Biochemistry 41:5712-5719(2002) [PubMed: 11980475] [Abstract]
Cited for: STRUCTURE BY NMR OF 410-412.

Cross-references

Sequence databases

X87417 Genomic DNA. Translation: CAA60868.2.

3D structure databases

EntryMethodResolution (Å)ChainPositionsPDBsum
1K42NMR-A270-272[»]
1K45NMR-A270-272[»]
ModBaseSearch...

Protein family/group databases

CAZyCBM4. Carbohydrate-Binding Module Family 4.
GH10. Glycoside Hydrolase Family 10.

Family and domain databases

InterProIPR001000. Glyco_hydro_10.
IPR013781. Glyco_hydro_sg_catalytic.
[Graphical view]
Gene3DG3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
PfamPF00331. Glyco_hydro_10. 1 hit.
[Graphical view]
SMARTSM00633. Glyco_10. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameP96988_RHOMR
AccessionPrimary (citable) accession number: P96988
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 1997
Last sequence update: June 1, 2003
Last modified: June 16, 2009
This is version 41 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information