P96988 (P96988_RHOMR) Unreviewed, UniProtKB/TrEMBL
Last modified
December 14, 2011.
Version 49.
History...
Names·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
Names·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize orderNames and origin
| Protein names | Submitted name: Xylanase EMBL CAA60868.2 |
| Organism | Rhodothermus marinus (Rhodothermus obamensis) EMBL CAA60868.2 |
| Taxonomic identifier | 29549 [NCBI] |
| Taxonomic lineage | Bacteria › Bacteroidetes › Bacteroidetes Order II. Incertae sedis › Rhodothermaceae › Rhodothermus |
Protein attributes
| Sequence length | 412 AA. |
| Sequence status | Fragment. |
| Protein existence | Evidence at protein level |
Ontologies
| Keywords | |
|---|---|
| Biological process | Xylan degradation EMBL CAA60868.2 |
| Technical term | 3D-structure PDB 1K45 PDB 1K42 |
| Gene Ontology (GO) | |
| Biological process | xylan catabolic process Inferred from electronic annotation. Source: UniProtKB-KW |
| Molecular function | cation binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compoundsInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||
Experimental info | ||||||||
|---|---|---|---|---|---|---|---|---|
| Non-terminal residue | 1 | 1 | EMBL CAA60868.2 | |||||
Sequences
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References
| [1] | Nordberg Karlsson E.M. Submitted (MAR-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: DSM 4252 EMBL CAA60868.2. |
| [2] | "The solution structure of the CBM4-2 carbohydrate binding module from a thermostable Rhodothermus marinus xylanase." Simpson P.J., Jamieson S.J., Abou-Hachem M., Karlsson E.N., Gilbert H.J., Holst O., Williamson M.P. Biochemistry 41:5712-5719(2002) [PubMed: 11980475] [Abstract] Cited for: STRUCTURE BY NMR OF 270-272. |
Cross-references
Sequence databases | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | X87417 Genomic DNA. Translation: CAA60868.2. | ||||||||||||||||||
3D structure databases | |||||||||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | P96988. | ||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||
Protein family/group databases | |||||||||||||||||||
| CAZy | CBM4. Carbohydrate-Binding Module Family 4. GH10. Glycoside Hydrolase Family 10. | ||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||
Family and domain databases | |||||||||||||||||||
| InterPro | IPR001000. Glyco_hydro_10. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. [Graphical view] | ||||||||||||||||||
| Gene3D | G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit. | ||||||||||||||||||
| Pfam | PF00331. Glyco_hydro_10. 1 hit. [Graphical view] | ||||||||||||||||||
| SMART | SM00633. Glyco_10. 1 hit. [Graphical view] | ||||||||||||||||||
| SUPFAM | SSF51445. Glyco_hydro_cat. 1 hit. | ||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||
Entry information
| Entry name | P96988_RHOMR | ||||||||
| Accession | Primary (citable) accession number: P96988 | ||||||||
| Entry history |
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| Entry status | Unreviewed (UniProtKB/TrEMBL) | ||||||||

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