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Protein

Uncharacterized HTH-type transcriptional regulator YwqM

Gene

ywqM

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi18 – 37H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciBSUB:BSU36160-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YwqM
Gene namesi
Name:ywqM
Ordered Locus Names:BSU36160
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003606831 – 293Uncharacterized HTH-type transcriptional regulator YwqMAdd BLAST293

Proteomic databases

PaxDbiP96725
PRIDEiP96725

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100019551

Structurei

3D structure databases

ProteinModelPortaliP96725
SMRiP96725
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 58HTH lysR-typePROSITE-ProRule annotationAdd BLAST58

Phylogenomic databases

eggNOGiENOG4107V2S Bacteria
COG0583 LUCA
HOGENOMiHOG000233521
InParanoidiP96725
OMAiKQCVIAD
PhylomeDBiP96725

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
PRINTSiPR00039 HTHLYSR
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

P96725-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MELKQLITFI TAAEHVNFTL TAKMLNYAQS SVTSQIKSLE EEIGTPLFER
60 70 80 90 100
LGKRLILTEA GKTFKSYAQK IIALTEEAKM ATNQVRETTG TLKIGATESQ
110 120 130 140 150
CTYRLPPIIK EFKQAFPQVK LIFKPYISNE QAKEQLLQGQ LDITFILDVN
160 170 180 190 200
RMEDALHVES LIQDEIKMVA ANDHPFPADL PVTLKDLQNE TLLLTEDGCS
210 220 230 240 250
YRTLFENNLH DSGIYPNKLE FVSIEAIKQC VMAGLGIGIL PEMTVKDDIA
260 270 280 290
AGRMKELNWQ SDCPVFTQLA WHKDKWMSAP LKAFIDLTRK TFK
Length:293
Mass (Da):33,175
Last modified:July 1, 1997 - v2
Checksum:i896DEA533C98280E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z92952 Genomic DNA Translation: CAB07458.1
AL009126 Genomic DNA Translation: CAB15633.1
PIRiH70067
RefSeqiNP_391497.1, NC_000964.3
WP_003243262.1, NZ_JNCM01000034.1

Genome annotation databases

EnsemblBacteriaiCAB15633; CAB15633; BSU36160
GeneIDi936887
KEGGibsu:BSU36160
PATRICifig|224308.179.peg.3913

Similar proteinsi

Entry informationi

Entry nameiYWQM_BACSU
AccessioniPrimary (citable) accession number: P96725
Secondary accession number(s): Q795B9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: July 1, 1997
Last modified: May 23, 2018
This is version 112 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

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