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Protein

Uncharacterized HTH-type transcriptional regulator YdfL

Gene

ydfL

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi7 – 26H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding, Repressor
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciBSUB:BSU05460-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YdfL
Gene namesi
Name:ydfL
Ordered Locus Names:BSU05460
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003616821 – 270Uncharacterized HTH-type transcriptional regulator YdfLAdd BLAST270

Proteomic databases

PaxDbiP96690
PRIDEiP96690

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100003073

Structurei

3D structure databases

ProteinModelPortaliP96690
SMRiP96690
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini4 – 74HTH merR-typePROSITE-ProRule annotationAdd BLAST71

Phylogenomic databases

eggNOGiENOG4108Z5V Bacteria
COG0789 LUCA
COG4978 LUCA
HOGENOMiHOG000087117
InParanoidiP96690
OMAiPYEETDA
PhylomeDBiP96690

Family and domain databases

Gene3Di3.20.80.10, 1 hit
InterProiView protein in InterPro
IPR010499 AraC_E-bd
IPR009061 DNA-bd_dom_put_sf
IPR029442 GyrI-like
IPR000551 MerR-type_HTH_dom
IPR011256 Reg_factor_effector_dom_sf
PfamiView protein in Pfam
PF06445 GyrI-like, 1 hit
PF13411 MerR_1, 1 hit
SMARTiView protein in SMART
SM00871 AraC_E_bind, 1 hit
SM00422 HTH_MERR, 1 hit
SUPFAMiSSF46955 SSF46955, 1 hit
SSF55136 SSF55136, 1 hit
PROSITEiView protein in PROSITE
PS50937 HTH_MERR_2, 1 hit

Sequencei

Sequence statusi: Complete.

P96690-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKEFFSIGEV SKLFNVKISA LRYYDEIGLL KPEYKDEQTN YRYYSTQQFE
60 70 80 90 100
RLDTIKYLRA LGLPINKLLD FYNSQNTNTL LHLLKSQQVE IDRKKKELER
110 120 130 140 150
IERKISRRIT HIEDAVNMPL HQISKIKLPA MRVAYLQHEY VLGHDIEHSL
160 170 180 190 200
AELRTHLNVN EDIFIGKIGL SISAANVKAK QFDKYSSIFM ILEDENEKTS
210 220 230 240 250
SEIIFPSREY LQIRFKGSHP EAEPYYKKLL AYMKEHHYEV AGDSIEITLI
260 270
DYGITNNLDN YVTEILLPIK
Length:270
Mass (Da):31,783
Last modified:May 1, 1997 - v1
Checksum:i1C487674F59A6797
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001488 Genomic DNA Translation: BAA19380.1
AL009126 Genomic DNA Translation: CAB12353.1
PIRiB69781
RefSeqiNP_388427.1, NC_000964.3
WP_003244218.1, NZ_JNCM01000031.1

Genome annotation databases

EnsemblBacteriaiCAB12353; CAB12353; BSU05460
GeneIDi938078
KEGGibsu:BSU05460
PATRICifig|224308.179.peg.586

Similar proteinsi

Entry informationi

Entry nameiYDFL_BACSU
AccessioniPrimary (citable) accession number: P96690
Secondary accession number(s): Q797G1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: May 1, 1997
Last modified: May 23, 2018
This is version 110 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

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