Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Transcriptional regulatory protein YdfI

Gene

ydfI

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Member of the two-component regulatory system YdfH/YdfI. Regulates the transcription of ydfJ by binding to its promoter region.2 Publications

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi166 – 185H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation, Two-component regulatory system

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU05420-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Transcriptional regulatory protein YdfI
Gene namesi
Name:ydfI
Ordered Locus Names:BSU05420
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000813941 – 213Transcriptional regulatory protein YdfIAdd BLAST213

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei544-aspartylphosphatePROSITE-ProRule annotation1

Post-translational modificationi

Phosphorylated by YdfH.Curated

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiP96686.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100003053.

Structurei

3D structure databases

ProteinModelPortaliP96686.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 118Response regulatoryPROSITE-ProRule annotationAdd BLAST116
Domaini142 – 207HTH luxR-typePROSITE-ProRule annotationAdd BLAST66

Sequence similaritiesi

Contains 1 HTH luxR-type DNA-binding domain.PROSITE-ProRule annotation
Contains 1 response regulatory domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108VB1. Bacteria.
COG2197. LUCA.
HOGENOMiHOG000034813.
InParanoidiP96686.
KOiK11624.
OMAiVICAIRS.
PhylomeDBiP96686.

Family and domain databases

CDDicd06170. LuxR_C_like. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiIPR011006. CheY-like_superfamily.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
PF00072. Response_reg. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00421. HTH_LUXR. 1 hit.
SM00448. REC. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF52172. SSF52172. 1 hit.
PROSITEiPS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.
PS50110. RESPONSE_REGULATORY. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P96686-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNKVLIVDDH LVVREGLKLL IETNDQYTII GEAENGKVAV RLADELEPDI
60 70 80 90 100
ILMDLYMPEM SGLEAIKQIK EKHDTPIIIL TTYNEDHLMI EGIELGAKGY
110 120 130 140 150
LLKDTSSETL FHTMDAAIRG NVLLQPDILK RLQEIQFERM KKQRNETQLT
160 170 180 190 200
EKEVIVLKAI AKGLKSKAIA FDLGVSERTV KSRLTSIYNK LGANSRTEAV
210
TIAMQKGILT IDN
Length:213
Mass (Da):23,974
Last modified:May 1, 1997 - v1
Checksum:iC7A5994B5F73CE7F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001488 Genomic DNA. Translation: BAA19376.1.
AL009126 Genomic DNA. Translation: CAB12349.1.
PIRiG69780.
RefSeqiNP_388423.1. NC_000964.3.
WP_003244318.1. NZ_JNCM01000031.1.

Genome annotation databases

EnsemblBacteriaiCAB12349; CAB12349; BSU05420.
GeneIDi938080.
KEGGibsu:BSU05420.
PATRICi18972690. VBIBacSub10457_0566.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001488 Genomic DNA. Translation: BAA19376.1.
AL009126 Genomic DNA. Translation: CAB12349.1.
PIRiG69780.
RefSeqiNP_388423.1. NC_000964.3.
WP_003244318.1. NZ_JNCM01000031.1.

3D structure databases

ProteinModelPortaliP96686.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100003053.

Proteomic databases

PaxDbiP96686.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12349; CAB12349; BSU05420.
GeneIDi938080.
KEGGibsu:BSU05420.
PATRICi18972690. VBIBacSub10457_0566.

Phylogenomic databases

eggNOGiENOG4108VB1. Bacteria.
COG2197. LUCA.
HOGENOMiHOG000034813.
InParanoidiP96686.
KOiK11624.
OMAiVICAIRS.
PhylomeDBiP96686.

Enzyme and pathway databases

BioCyciBSUB:BSU05420-MONOMER.

Family and domain databases

CDDicd06170. LuxR_C_like. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiIPR011006. CheY-like_superfamily.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
PF00072. Response_reg. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00421. HTH_LUXR. 1 hit.
SM00448. REC. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF52172. SSF52172. 1 hit.
PROSITEiPS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.
PS50110. RESPONSE_REGULATORY. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDFI_BACSU
AccessioniPrimary (citable) accession number: P96686
Secondary accession number(s): Q797G5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 5, 2005
Last sequence update: May 1, 1997
Last modified: October 5, 2016
This is version 105 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.