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Protein

Putative arsenical pump membrane protein YdfA

Gene

ydfA

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Arsenical resistance

Enzyme and pathway databases

BioCyciBSUB:BSU05340-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative arsenical pump membrane protein YdfA
Gene namesi
Name:ydfA
Ordered Locus Names:BSU05340
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei1 – 2121HelicalSequence analysisAdd
BLAST
Transmembranei26 – 4621HelicalSequence analysisAdd
BLAST
Transmembranei52 – 7221HelicalSequence analysisAdd
BLAST
Transmembranei92 – 11322HelicalSequence analysisAdd
BLAST
Transmembranei117 – 13418HelicalSequence analysisAdd
BLAST
Transmembranei139 – 15921HelicalSequence analysisAdd
BLAST
Transmembranei181 – 20121HelicalSequence analysisAdd
BLAST
Transmembranei225 – 24521HelicalSequence analysisAdd
BLAST
Transmembranei246 – 26621HelicalSequence analysisAdd
BLAST
Transmembranei277 – 29721HelicalSequence analysisAdd
BLAST
Transmembranei319 – 33921HelicalSequence analysisAdd
BLAST
Transmembranei410 – 43021HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 435435Putative arsenical pump membrane protein YdfAPRO_0000376838Add
BLAST

Proteomic databases

PaxDbiP96678.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100003003.

Structurei

3D structure databases

ProteinModelPortaliP96678.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ArsB family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4107R5R. Bacteria.
COG1055. LUCA.
HOGENOMiHOG000005271.
InParanoidiP96678.
KOiK03893.
OMAiEPTKIFD.
OrthoDBiEOG6H1Q14.
PhylomeDBiP96678.

Family and domain databases

InterProiIPR000802. Arsenical_pump_ArsB.
[Graphical view]
PfamiPF02040. ArsB. 1 hit.
[Graphical view]
PRINTSiPR00758. ARSENICPUMP.
TIGRFAMsiTIGR00935. 2a45. 1 hit.

Sequencei

Sequence statusi: Complete.

P96678-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSMILAVFI FLLTLVLVIW QPKNLSIGWS ACGGAVLALI AGVVNFHDVL
60 70 80 90 100
TVTGIVWNAT LAFVAIILIS LILDNIGFFE WAALHMAKAA KGYGVRMFVY
110 120 130 140 150
VSLLGAIVAA LFANDGAALI LTPIVLAMVR ALHFNEKLVF PFIIASGFIA
160 170 180 190 200
DTTSLPFVVS NLVNIVSADY FHITFIDYAS RMVVPYLFSL LASIIVLYLF
210 220 230 240 250
FRKSIPKRYD LTEVKKPVEA IKDQNMFRLS WYILGLLLIG YFASEFFSIP
260 270 280 290 300
VSVVAGSIAI IFLIAAQKSP AVHTKKVVKE APWAIVFFSI GMYVVVYGVR
310 320 330 340 350
NAGLTDVLSD VIQAAADQGL FAGTIGMGFI AAILSSIMNN LPTVMIDALA
360 370 380 390 400
IAGTDTHGMM REALIYANVI GSDLGPKITP IGSLATLLWL HVLSHKGMKI
410 420 430
SWGTYFKTGI ILTIPTLLIT LVGLYIWLLI IHSCF
Length:435
Mass (Da):47,322
Last modified:May 1, 1997 - v1
Checksum:i700768A9560F9E86
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001488 Genomic DNA. Translation: BAA19368.1.
AL009126 Genomic DNA. Translation: CAB12341.1.
PIRiG69779.
RefSeqiNP_388415.1. NC_000964.3.
WP_003243030.1. NZ_JNCM01000031.1.

Genome annotation databases

EnsemblBacteriaiCAB12341; CAB12341; BSU05340.
GeneIDi939905.
KEGGibsu:BSU05340.
PATRICi18972670. VBIBacSub10457_0556.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001488 Genomic DNA. Translation: BAA19368.1.
AL009126 Genomic DNA. Translation: CAB12341.1.
PIRiG69779.
RefSeqiNP_388415.1. NC_000964.3.
WP_003243030.1. NZ_JNCM01000031.1.

3D structure databases

ProteinModelPortaliP96678.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100003003.

Proteomic databases

PaxDbiP96678.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12341; CAB12341; BSU05340.
GeneIDi939905.
KEGGibsu:BSU05340.
PATRICi18972670. VBIBacSub10457_0556.

Phylogenomic databases

eggNOGiENOG4107R5R. Bacteria.
COG1055. LUCA.
HOGENOMiHOG000005271.
InParanoidiP96678.
KOiK03893.
OMAiEPTKIFD.
OrthoDBiEOG6H1Q14.
PhylomeDBiP96678.

Enzyme and pathway databases

BioCyciBSUB:BSU05340-MONOMER.

Family and domain databases

InterProiIPR000802. Arsenical_pump_ArsB.
[Graphical view]
PfamiPF02040. ArsB. 1 hit.
[Graphical view]
PRINTSiPR00758. ARSENICPUMP.
TIGRFAMsiTIGR00935. 2a45. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A 148 kbp sequence of the region between 35 and 47 degree of the Bacillus subtilis genome."
    Kasahara Y., Nakai S., Lee S., Sadaie Y., Ogasawara N.
    Submitted (MAR-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiYDFA_BACSU
AccessioniPrimary (citable) accession number: P96678
Secondary accession number(s): Q797H2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 16, 2009
Last sequence update: May 1, 1997
Last modified: February 17, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.